Evidence map›Paper›PMID 24367045›Full record

ArticleJournal of lipid research2014

Novel approach in LC-MS/MS using MRM to generate a full profile of acyl-CoAs: discovery of acyl-dephospho-CoAs.

Qingling Li, Shenghui Zhang, Jessica M Berthiaume, Brigitte Simons, Guo-Fang Zhang

Abstract read
In one paragraph

Article in Journal of lipid research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  12. Ischemia promotes acyl-CoAs dephosphorylation and propionyl-CoA accumulation.Metabolomics : Official journal of the Metabolomic Society · 2023
    Article
  13. Article
  14. Protein cost minimization promotes the emergence of coenzyme redundancy.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Qingling LiDepartment of Nutrition, Case Western Reserve University, Cleveland, OH 44106.
Shenghui Zhang
Jessica M Berthiaume
Brigitte Simons
Guo-Fang Zhang

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024989 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$53.7M
Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
Dynamic Metabolomics via Isotopomer Analysis(RMI)R33DK070291 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI BRUNENGRABER, HENRI · 2004 to 2006
$3.3M
Metabolomic and Isotopomer Analysis of Xenobiotic StressR01ES013925 · NIEHS · CASE WESTERN RESERVE UNIVERSITY · PI BRUNENGRABER, HENRI · 2005 to 2009
$2.7M
NCATS NIH HHS UL1 TR000439NCRR NIH HHS UL1 RR024989NIDDK NIH HHS R33 DK070291NIDDK NIH HHS R33DK070291NIEHS NIH HHS R01 ES013925NIEHS NIH HHS R01ES013925
6 · The paper itself

Abstract

A metabolomic approach to selectively profile all acyl-CoAs was developed using a programmed multiple reaction monitoring (MRM) method in LC-MS/MS and was employed in the analysis of various rat organs. The programmed MRM method possessed 300 mass ion transitions with the mass difference of 507 between precursor ion (Q1) and product ion (Q3), and the precursor ion started from m/z 768 and progressively increased one mass unit at each step. Acyl-dephospho-CoAs resulting from the dephosphorylation of acyl-CoAs were identified by accurate MS and fragmentation. Acyl-dephospho-CoAs were also quantitatively scanned by the MRM method with the mass difference of 427 between Q1 and Q3 mass ions. Acyl-CoAs and dephospho-CoAs were assayed with limits of detection ranging from 2 to 133 nM. The accuracy of the method was demonstrated by assaying a range of concentrations of spiked acyl-CoAs with the results of 80-114%. The distribution of acyl-CoAs reflects the metabolic status of each organ. The physiological role of dephosphorylation of acyl-CoAs remains to be further characterized. The methodology described herein provides a novel strategy in metabolomic studies to quantitatively and qualitatively profile all potential acyl-CoAs and acyl-dephospho-CoAs.

Indexed as

Acyl Coenzyme AAnimalsBrainChromatography, LiquidCoenzyme AKidneyLiverMaleMetabolomicsMyocardiumRatsRats, Sprague-DawleyReproducibility of ResultsTandem Mass SpectrometryAcyl Coenzyme ACoenzyme Adephosphocoenzyme Aliquid chromatographymass spectrometrymultiple reaction monitoringrat organs

Identifiers

PMID24367045
PMCPMC3934743

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.