Evidence map›Paper›PMID 24366667›Full record

ArticleMolecular pharmacology2014

Pore-exposed tyrosine residues of P-glycoprotein are important hydrogen-bonding partners for drugs.

Yaprak Dönmez Cakil, Narakorn Khunweeraphong, Zahida Parveen, Diethart Schmid, Matthias Artaker, Gerhard F Ecker, Harald H Sitte, Oliver Pusch, Thomas Stockner, Peter Chiba

Open access · greenAbstract read
In one paragraph

Article in Molecular pharmacology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. A Unique In Vitro Assay to Investigate ABCB4 Transport Function.International journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Evidence for the Interaction of AMolecular pharmacology · 2019
    Article
  14. Comparison of mechanistic transport cycle models of ABC exporters.Biochimica et biophysica acta. Biomembranes · 2018
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Yaprak Dönmez CakilInstitutes of Medical Chemistry (Y.D.C., N.K., Z.P., P.C.), Pharmacology (Y.D.C., H.H.S., T.S.), and Physiology (D.S.), Department of Medical Biochemistry, Max F. Perutz Laboratories (M.A.), and Department of Cell and Developmental Biology (O.P.), Medical University of Vienna, Vienna, Austria; Department of Biochemistry, Abdul Wali Khan University Mardan, Pakistan (Z.P.); and Emerging Field Pharmacoinformatics, Department of Medicinal Chemistry, University of Vienna, Vienna, Austria (G.F.E.).
Narakorn Khunweeraphong
Zahida Parveen
Diethart Schmid
Matthias Artaker
Gerhard F Ecker
Harald H Sitte
Oliver Pusch
Thomas Stockner
Peter Chiba
Abdul Wali Khan University Mardan · PKMax Perutz Labs · ATMedical University of Vienna · ATUniversity of Vienna · AT

Funding

Austrian Science Fund FWF F 3502Austrian Science Fund FWF F 3524Austrian Science Fund FWF P 23319
6 · The paper itself

Abstract

The multispecific efflux transporter, P-glycoprotein, plays an important role in drug disposition. Substrate translocation occurs along the interface of its transmembrane domains. The rotational C2 symmetry of ATP-binding cassette transporters implies the existence of two symmetry-related sets of substrate-interacting amino acids. These sets are identical in homodimeric transporters, and remain evolutionary related in full transporters, such as P-glycoprotein, in which substrates bind preferentially, but nonexclusively, to one of two binding sites. We explored the role of pore-exposed tyrosines for hydrogen-bonding interactions with propafenone type ligands in their preferred binding site 2. Tyrosine 953 is shown to form hydrogen bonds not only with propafenone analogs, but also with the preferred site 1 substrate rhodamine123. Furthermore, an accessory role of tyrosine 950 for binding of selected propafenone analogs is demonstrated. The present study demonstrates the importance of domain interface tyrosine residues for interaction of small molecules with P-glycoprotein.

Indexed as

ATP Binding Cassette Transporter, Subfamily B, Member 1Binding SitesCell LineHEK293 CellsHumansHydrogenHydrogen BondingLigandsMutationPropafenoneProtein Structure, TertiaryTyrosineATP Binding Cassette Transporter, Subfamily B, Member 1HydrogenLigandsPropafenoneTyrosine

Identifiers

PMID24366667
PMCPMC4503343
OpenAlexW2168202717

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.