Evidence map›Paper›PMID 24366067›Full record

ArticleInternational journal of molecular sciences2013

A human XPC protein interactome--a resource.

Abigail Lubin, Ling Zhang, Hua Chen, Victoria M White, Feng Gong

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  5. Role of Mitochondria in Viral Infections.Life (Basel, Switzerland) · 2021
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  19. Architecture of the human XPC DNA repair and stem cell coactivator complex.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Abigail Lubin
Ling Zhang
Hua Chen
Victoria M White
Feng GongDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL 33156, USA. fgong@med.miami.edu.
University of Miami · US

Funding

SWI/SNF chromatin remodeling in nucleotide excision repairR01ES017784 · NIEHS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI GONG, FENG · 2010 to 2014
$1.7M
NIEHS NIH HHS ES017784-4S1NIEHS NIH HHS NIH R01 ES017784NIEHS NIH HHS R01 ES017784
6 · The paper itself

Abstract

Global genome nucleotide excision repair (GG-NER) is responsible for identifying and removing bulky adducts from non-transcribed DNA that result from damaging agents such as UV radiation and cisplatin. Xeroderma pigmentosum complementation group C (XPC) is one of the essential damage recognition proteins of the GG-NER pathway and its dysfunction results in xeroderma pigmentosum (XP), a disorder involving photosensitivity and a predisposition to cancer. To better understand the identification of DNA damage by XPC in the context of chromatin and the role of XPC in the pathogenesis of XP, we characterized the interactome of XPC using a high throughput yeast two-hybrid screening. Our screening showed 49 novel interactors of XPC involved in DNA repair and replication, proteolysis and post-translational modifications, transcription regulation, signal transduction, and metabolism. Importantly, we validated the XPC-OTUD4 interaction by co-IP and provided evidence that OTUD4 knockdown in human cells indeed affects the levels of ubiquitinated XPC, supporting a hypothesis that the OTUD4 deubiquitinase is involved in XPC recycling by cleaving the ubiquitin moiety. This high-throughput characterization of the XPC interactome provides a resource for future exploration and suggests that XPC may have many uncharacterized cellular functions.

Indexed as

DNA RepairHCT116 CellsHumansProtein Interaction MapsRNA InterferenceRNA, Small InterferingSequence Analysis, DNATwo-Hybrid System TechniquesUbiquitinationUbiquitin-Specific ProteasesXeroderma PigmentosumRNA, Small InterferingUbiquitin-Specific Proteases

Identifiers

PMID24366067
PMCPMC3907802
OpenAlexW2033734580

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.