Evidence map›Paper›PMID 24365913›Full record

ArticleJournal of synchrotron radiation2014

Synchrotron X-ray footprinting on tour.

Jen Bohon, Rhijuta D'Mello, Corie Ralston, Sayan Gupta, Mark R Chance

Abstract read
In one paragraph

Article in Journal of synchrotron radiation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. The XFP (17-BM) beamline for X-ray footprinting at NSLS-II.Journal of synchrotron radiation · 2019
    Article
  5. Article
  6. Time-Resolved Hydroxyl Radical Footprinting of RNA with X-Rays.Current protocols in nucleic acid chemistry · 2018
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jen BohonCenter for Synchrotron Biosciences, Case Western Reserve University, National Synchrotron Light Source, Brookhaven National Laboratory, Upton, NY 11973, USA.
Rhijuta D'MelloCenter for Synchrotron Biosciences, Case Western Reserve University, National Synchrotron Light Source, Brookhaven National Laboratory, Upton, NY 11973, USA.
Corie RalstonBerkeley Center for Structural Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.
Sayan GuptaBerkeley Center for Structural Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.
Mark R ChanceCenter for Synchrotron Biosciences, Case Western Reserve University, National Synchrotron Light Source, Brookhaven National Laboratory, Upton, NY 11973, USA.

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Radiolytic Footprinting Methods for Structural Mass SpectrometryR01EB009688 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2010 to 2013
$1.1M
NIBIB NIH HHS P30 EB009998NIBIB NIH HHS P30-EB-09998NIBIB NIH HHS R01 EB009688NIBIB NIH HHS R01-EB-09688
6 · The paper itself

Abstract

Synchrotron footprinting is a valuable technique in structural biology for understanding macromolecular solution-state structure and dynamics of proteins and nucleic acids. Although an extremely powerful tool, there is currently only a single facility in the USA, the X28C beamline at the National Synchrotron Light Source (NSLS), dedicated to providing infrastructure, technology development and support for these studies. The high flux density of the focused white beam and variety of specialized exposure environments available at X28C enables footprinting of highly complex biological systems; however, it is likely that a significant fraction of interesting experiments could be performed at unspecialized facilities. In an effort to investigate the viability of a beamline-flexible footprinting program, a standard sample was taken on tour around the nation to be exposed at several US synchrotrons. This work describes how a relatively simple and transportable apparatus can allow beamlines at the NSLS, CHESS, APS and ALS to be used for synchrotron footprinting in a general user mode that can provide useful results.

Indexed as

SynchrotronsX-RaysChromatography, High Pressure LiquidCytochromes cNucleic AcidsTandem Mass SpectrometryCytochromes cNucleic Acidsbeamlinesfootprintingradiolysisstructural biologyX-rays

Identifiers

PMID24365913
PMCPMC3874017

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.