Evidence map›Paper›PMID 24365721›Full record

ArticlePlasmid2014

Sequence determinants for DNA packaging specificity in the S. aureus pathogenicity island SaPI1.

Joana C Bento, Kristin D Lane, Erik K Read, Nuno Cerca, Gail E Christie

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Plasmid, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

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  15. Precisely modulated pathogenicity island interference with late phage gene transcription.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Joana C BentoDepartment of Microbiology and Immunology, Virginia Commonwealth University School of Medicine, PO Box 980678, Richmond, VA 23298-0678, USA; Centre of Biological Engineering, IBB - Institute for Biotechnology and Bioengineering, University of Minho, Campus de Gualtar 4710-057, Braga, Portugal. Electronic address: jcbento@vcu.edu.
Kristin D LaneDepartment of Microbiology and Immunology, Virginia Commonwealth University School of Medicine, PO Box 980678, Richmond, VA 23298-0678, USA. Electronic address: lanekd@vcu.edu.
Erik K ReadDivision of Monoclonal Antibodies, Center for Drug Evaluation and Research, Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA. Electronic address: Erik.Read@fda.hhs.gov.
Nuno CercaCentre of Biological Engineering, IBB - Institute for Biotechnology and Bioengineering, University of Minho, Campus de Gualtar 4710-057, Braga, Portugal. Electronic address: nunocerca@ceb.uminho.pt.
Gail E ChristieDepartment of Microbiology and Immunology, Virginia Commonwealth University School of Medicine, PO Box 980678, Richmond, VA 23298-0678, USA. Electronic address: christie@vcu.edu.
Virginia Commonwealth University · USCenter for Drug Evaluation and Research · USUniversity of Minho · PT

Funding

Helper phage mobilization of S. aureus superantigen pathogenicity islandsR56AI081837 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI CHRISTIE, GAIL E · 2010 to 2010
$372k
NIAID NIH HHS 1R56 AI081837NIAID NIH HHS HHSN272200700055CNIAID NIH HHS R56 AI081837PHS HHS HHSF2232010000521PHS HHS #HHSN272200700055C
6 · The paper itself

Abstract

The SaPIs and their relatives are a family of genomic islands that exploit helper phages for high frequency horizontal transfer. One of the mechanisms used by SaPIs to accomplish this molecular piracy is the redirection of the helper phage DNA packaging machinery. SaPIs encode a small terminase subunit that can be substituted for that of the phage. In this study we have determined the initial packaging cleavage sites for helper phage 80α, which uses the phage-encoded small terminase subunit, and for SaPI1, which uses the SaPI-encoded small terminase subunit. We have identified a 19nt SaPI1 sequence that is necessary and sufficient to allow high frequency 80α transduction of a plasmid by a terminase carrying the SaPI1-encoded small subunit. We also show that the hybrid enzyme with the SaPI1 small terminase subunit is capable of generalized transduction.

Indexed as

DNA PackagingGenomic IslandsChromosome MappingDNA, BacterialDNA, ViralEndodeoxyribonucleasesPlasmidsSequence Analysis, DNAStaphylococcus aureusStaphylococcus PhagesTransduction, GeneticDNA, BacterialDNA, ViralEndodeoxyribonucleasesterminaseDNA packagingHelper phagePac sitePathogenicity islandSaPITerminase

Identifiers

PMID24365721
PMCPMC3966571
OpenAlexW2137869506

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.