Evidence map›Paper›PMID 24364531›Full record

ArticleBiochemistry2014

Manipulating conserved heme cavity residues of chlorite dismutase: effect on structure, redox chemistry, and reactivity.

Stefan Hofbauer, Kira Gysel, Marzia Bellei, Andreas Hagmüller, Irene Schaffner, Georg Mlynek, Julius Kostan, Katharina F Pirker, Holger Daims, Paul G Furtmüller and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  8. Review
  9. Structure and reactivity of chlorite dismutase nitrosyls.Journal of inorganic biochemistry · 2020
    Article
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  11. Article
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  14. Active Sites of OBiochemistry · 2017
    Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Stefan HofbauerDepartment of Chemistry, Division of Biochemistry, VIBT - Vienna Institute of BioTechnology, BOKU - University of Natural Resources and Life Sciences , A-1190 Vienna, Austria.
Kira Gysel
Marzia Bellei
Andreas Hagmüller
Irene Schaffner
Georg Mlynek
Julius Kostan
Katharina F Pirker
Holger Daims
Paul G Furtmüller
Gianantonio Battistuzzi
Kristina Djinović-Carugo
Christian Obinger
BOKU University · ATMax Perutz Labs · ATUniversity of Vienna · ATUniversity of Modena and Reggio Emilia · IT

Funding

Austrian Science Fund FWF P 25270Austrian Science Fund FWF W 1224
6 · The paper itself

Abstract

Chlorite dismutases (Clds) are heme b containing oxidoreductases that convert chlorite to chloride and molecular oxygen. In order to elucidate the role of conserved heme cavity residues in the catalysis of this reaction comprehensive mutational and biochemical analyses of Cld from "Candidatus Nitrospira defluvii" (NdCld) were performed. Particularly, point mutations of the cavity-forming residues R173, K141, W145, W146, and E210 were performed. The effect of manipulation in 12 single and double mutants was probed by UV-vis spectroscopy, spectroelectrochemistry, pre-steady-state and steady-state kinetics, and X-ray crystallography. Resulting biochemical data are discussed with respect to the known crystal structure of wild-type NdCld and the variants R173A and R173K as well as the structures of R173E, W145V, W145F, and the R173Q/W146Y solved in this work. The findings allow a critical analysis of the role of these heme cavity residues in the reaction mechanism of chlorite degradation that is proposed to involve hypohalous acid as transient intermediate and formation of an O═O bond. The distal R173 is shown to be important (but not fully essential) for the reaction with chlorite, and, upon addition of cyanide, it acts as a proton acceptor in the formation of the resulting low-spin complex. The proximal H-bonding network including K141-E210-H160 keeps the enzyme in its ferric (E°' = -113 mV) and mainly five-coordinated high-spin state and is very susceptible to perturbation.

Indexed as

ChloridesCrystallography, X-RayCyanidesElectrochemistryHemeKineticsModels, MolecularOxidation-ReductionOxidoreductasesChlorideschloritechlorite dismutaseCyanidesHemeOxidoreductases

Identifiers

PMID24364531
PMCPMC3893830
OpenAlexW1992346810

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.