ArticlePlant & cell physiology2014
Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases.
Article in Plant & cell physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed, 46 citations in OpenAlex.
- HASCH - A high-throughput amplicon-based SNP-platform for medicinal cannabis and industrial hemp genotyping applications.BMC genomics · 2024Article
- Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species.BMC plant biology · 2023Article
- Recent progress in whole genome sequencing, high-density linkage maps, and genomic databases of ornamental plants.Breeding science · 2018Review
- The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017Article
- DNApod: DNA polymorphism annotation database from next-generation sequence read archives.PloS one · 2017Article
- Computational Tools for Genomic Studies in Plants.Current genomics · 2016Article
- Translational genomics for plant breeding with the genome sequence explosion.Plant biotechnology journal · 2016Review
- Metabolonote: a wiki-based database for managing hierarchical metadata of metabolome analyses.Frontiers in bioengineering and biotechnology · 2015Article
- Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes.Plant & cell physiology · 2015Article
- Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.Breeding science · 2014Article
- Systems biology in the context of big data and networks.BioMed research international · 2014Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Plant Genome DataBase Japan (PGDBj, http://pgdbj.jp/?ln=en) is a portal website that aims to integrate plant genome-related information from databases (DBs) and the literature. The PGDBj is comprised of three component DBs and a cross-search engine, which provides a seamless search over the contents of the DBs. The three DBs are as follows. (i) The Ortholog DB, providing gene cluster information based on the amino acid sequence similarity. Over 500,000 amino acid sequences of 20 Viridiplantae species were subjected to reciprocal BLAST searches and clustered. Sequences from plant genome DBs (e.g. TAIR10 and RAP-DB) were also included in the cluster with a direct link to the original DB. (ii) The Plant Resource DB, integrating the SABRE DB, which provides cDNA and genome sequence resources accumulated and maintained in the RIKEN BioResource Center and National BioResource Projects. (iii) The DNA Marker DB, providing manually or automatically curated information of DNA markers, quantitative trait loci and related linkage maps, from the literature and external DBs. As the PGDBj targets various plant species, including model plants, algae, and crops important as food, fodder and biofuel, researchers in the field of basic biology as well as a wide range of agronomic fields are encouraged to perform searches using DNA sequences, gene names, traits and phenotypes of interest. The PGDBj will return the search results from the component DBs and various types of linked external DBs.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.