Evidence map›Paper›PMID 24360906›Full record

ArticleDevelopmental biology2014

Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers.

Jean-Louis Plouhinec, Daniel D Roche, Caterina Pegoraro, Ana Leonor Figueiredo, Frédérique Maczkowiak, Lisa J Brunet, Cécile Milet, Jean-Philippe Vert, Nicolas Pollet, Richard M Harland and 1 more

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 1 synthesis or guideline pooled it, 128 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Ontogeny of the spinal cord dorsal horn.Science (New York, N.Y.) · 2026
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  4. Epigenetic crosstalk in neuroblastoma development and progression.Frontiers in cell and developmental biology · 2026
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  5. Genetic architecture of craniofacial morphogenesis: roles ofFrontiers in cell and developmental biology · 2026
    Review
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Jean-Louis PlouhinecUniversité Paris Sud, Centre Universitaire, F-91405 Orsay, France; Institut Curie, CNRS UMR3347, INSERM U1021, Centre Universitaire, F-91405 Orsay, France.
Daniel D RocheUniversité Paris Sud, Centre Universitaire, F-91405 Orsay, France; Institut Curie, CNRS UMR3347, INSERM U1021, Centre Universitaire, F-91405 Orsay, France.
Caterina PegoraroUniversité Paris Sud, Centre Universitaire, F-91405 Orsay, France; Institut Curie, CNRS UMR3347, INSERM U1021, Centre Universitaire, F-91405 Orsay, France.
Ana Leonor FigueiredoUniversité Paris Sud, Centre Universitaire, F-91405 Orsay, France; Institut Curie, CNRS UMR3347, INSERM U1021, Centre Universitaire, F-91405 Orsay, France.
Frédérique MaczkowiakUniversité Paris Sud, Centre Universitaire, F-91405 Orsay, France; Institut Curie, CNRS UMR3347, INSERM U1021, Centre Universitaire, F-91405 Orsay, France.
Lisa J BrunetUniversity of California at Berkeley, Department of Molecular and Cell Biology and Center for Integrative Genomics, USA.
Cécile MiletUniversité Paris Sud, Centre Universitaire, F-91405 Orsay, France; Institut Curie, CNRS UMR3347, INSERM U1021, Centre Universitaire, F-91405 Orsay, France.
Jean-Philippe VertCentre for Computational Biology, Mines ParisTech, 77300 Fontainebleau, France; Institut Curie, F-75248 Paris, France; INSERM U900, F-75248 Paris, France.
Nicolas PolletCNRS, iSSB, F-91000 Évry, France; Univ. Evry, iSSB, F-91000 Évry, France.
Richard M HarlandUniversity of California at Berkeley, Department of Molecular and Cell Biology and Center for Integrative Genomics, USA.
Anne H Monsoro-BurqUniversité Paris Sud, Centre Universitaire, F-91405 Orsay, France; Institut Curie, CNRS UMR3347, INSERM U1021, Centre Universitaire, F-91405 Orsay, France. Electronic address: anne-helene.monsoro-burq@curie.fr.
Université Paris-Sud · FRUniversity of California, Berkeley · USCentre National de la Recherche Scientifique · FRInserm · FR

Funding

Gene Expression in Amphibian DevlopementR01GM042341 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARLAND, RICHARD M · 1988 to 2016
$5.7M
European Research Council 280032NIGMS NIH HHS GM42341NIGMS NIH HHS R01 GM042341
6 · The paper itself

Abstract

Neural crest development is orchestrated by a complex and still poorly understood gene regulatory network. Premigratory neural crest is induced at the lateral border of the neural plate by the combined action of signaling molecules and transcription factors such as AP2, Gbx2, Pax3 and Zic1. Among them, Pax3 and Zic1 are both necessary and sufficient to trigger a complete neural crest developmental program. However, their gene targets in the neural crest regulatory network remain unknown. Here, through a transcriptome analysis of frog microdissected neural border, we identified an extended gene signature for the premigratory neural crest, and we defined novel potential members of the regulatory network. This signature includes 34 novel genes, as well as 44 known genes expressed at the neural border. Using another microarray analysis which combined Pax3 and Zic1 gain-of-function and protein translation blockade, we uncovered 25 Pax3 and Zic1 direct targets within this signature. We demonstrated that the neural border specifiers Pax3 and Zic1 are direct upstream regulators of neural crest specifiers Snail1/2, Foxd3, Twist1, and Tfap2b. In addition, they may modulate the transcriptional output of multiple signaling pathways involved in neural crest development (Wnt, Retinoic Acid) through the induction of key pathway regulators (Axin2 and Cyp26c1). We also found that Pax3 could maintain its own expression through a positive autoregulatory feedback loop. These hierarchical inductions, feedback loops, and pathway modulations provide novel tools to understand the neural crest induction network.

Indexed as

AnimalsElectrophoretic Mobility Shift AssayGene Expression Regulation, DevelopmentalGene Regulatory NetworksIn Situ HybridizationMicroarray AnalysisNeural CrestPaired Box Transcription FactorsPAX3 Transcription FactorReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionTranscription FactorsXenopus laevisXenopus ProteinsPaired Box Transcription FactorsPax3 protein, XenopusPAX3 Transcription FactorTranscription FactorsXenopus ProteinsZic1 protein, XenopusEmbryoGene regulatory networkMicroarrayNeural crestPax3TranscriptomeXenopus laevisZic1

Identifiers

PMID24360906
PMCPMC3962137
OpenAlexW2015651176

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.