Evidence map›Paper›PMID 24358307›Full record

ArticlePloS one2013

Characterization of the SigD regulon of C. difficile and its positive control of toxin production through the regulation of tcdR.

Imane El Meouche, Johann Peltier, Marc Monot, Olga Soutourina, Martine Pestel-Caron, Bruno Dupuy, Jean-Louis Pons

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 120 citations in OpenAlex.

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  16. Regulatory transcription factors ofCritical reviews in microbiology · 2023
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  18. Microbiology (Reading, England) · 2023
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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Imane El MeoucheLaboratoire G.R.A.M. (EA 2656 IFR 23 IHURBM), Université de Rouen, Rouen, France.
Johann PeltierLaboratoire G.R.A.M. (EA 2656 IFR 23 IHURBM), Université de Rouen, Rouen, France.
Marc MonotLaboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, Paris, France.
Olga SoutourinaLaboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, Paris, France ; Université Paris Diderot, Sorbonne Paris Cité, Cellule Pasteur, Paris, France.
Martine Pestel-CaronLaboratoire G.R.A.M. (EA 2656 IFR 23 IHURBM), Université de Rouen, Rouen, France.
Bruno DupuyLaboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, Paris, France.
Jean-Louis PonsLaboratoire G.R.A.M. (EA 2656 IFR 23 IHURBM), Université de Rouen, Rouen, France ; Laboratoire Ecosystème intestinal, Probiotiques, Antibiotiques (EA 4065, IFR IMTCE), Université Paris Descartes, Paris, France.
Université de Rouen Normandie · FRInstitut Pasteur · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium difficile intestinal disease is mediated largely by the actions of toxins A (TcdA) and B (TcdB), whose production occurs after the initial steps of colonization involving different surface or flagellar proteins. In B. subtilis, the sigma factor SigD controls flagellar synthesis, motility, and vegetative autolysins. A homolog of SigD encoding gene is present in the C.difficile 630 genome. We constructed a sigD mutant in C. difficile 630 ∆erm to analyze the regulon of SigD using a global transcriptomic approach. A total of 103 genes were differentially expressed between the wild-type and the sigD mutant, including genes involved in motility, metabolism and regulation. In addition, the sigD mutant displayed decreased expression of genes involved in flagellar biosynthesis, and also of genes encoding TcdA and TcdB as well as TcdR, the positive regulator of the toxins. Genomic analysis and RACE-PCR experiments allowed us to characterize promoter sequences of direct target genes of SigD including tcdR and to identify the SigD consensus. We then established that SigD positively regulates toxin expression via direct control of tcdR transcription. Interestingly, the overexpression of FlgM, a putative anti-SigD factor, inhibited the positive regulation of motility and toxin synthesis by SigD. Thus, SigD appears to be the first positive regulator of the toxin synthesis in C. difficile.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBacterial ToxinsBase SequenceBinding SitesClostridioides difficileConsensus SequenceDNA-Directed RNA PolymerasesFlagellaGene SilencingGenetic Complementation TestMutationPhenotypePosition-Specific Scoring MatricesPromoter Regions, GeneticProtein BindingBacterial ProteinsBacterial ToxinsDNA-Directed RNA Polymerases

Identifiers

PMID24358307
PMCPMC3865298
OpenAlexW2067574120

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.