Evidence map›Paper›PMID 24356113›Full record

ArticleScience (New York, N.Y.)2014

IFI16 DNA sensor is required for death of lymphoid CD4 T cells abortively infected with HIV.

Kathryn M Monroe, Zhiyuan Yang, Jeffrey R Johnson, Xin Geng, Gilad Doitsh, Nevan J Krogan, Warner C Greene

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 315 papers.

0numbers the graph read from it
0cells of the map it votes in
315citing papers in PubMed
27.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

315 citing papers in PubMed, 508 citations in OpenAlex.

  1. Review
  2. IFI27 and BAX are Essential for GSDME-Mediated Myeloma Cell Pyroptosis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. The Immunogenic Role of Self-DNA in T Cell Immunity.Clinical reviews in allergy & immunology · 2025
    Review
  10. IFI204 RestrictsMicroorganisms · 2025
    Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

255 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kathryn M MonroeGladstone Institute of Virology and Immunology, 1650 Owens Street, San Francisco, CA 94158, USA.
Zhiyuan Yang
Jeffrey R Johnson
Xin Geng
Gilad Doitsh
Nevan J Krogan
Warner C Greene
Gladstone Institutes · USAccordia Global Health Foundation · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
Using NK Cells to eliminate the latent HIV reservoirU19AI096113 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SPINA, CELSA A · 2011 to 2015
$39.5M
Molecular Virology and Systems Biology Screening CoreP01AI090935 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI HOFFMANN, ALEXANDER · 2010 to 2014
$20.4M
Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
HIV without AIDS: A Radically Different Approach to Help the Developing WorldDP1DA036502 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI GREENE, WARNER C. · 2013 to 2017
$4.9M
HIV-Induced CD4 T-Cell Depletion: An Innate Host Defense Gone Awry?R21AI102782 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI GREENE, WARNER C. · 2012 to 2013
$505k
NCCDPHP CDC HHS 1DP1036502NIAID NIH HHS P01 AI090935NIAID NIH HHS P30 AI027763NIAID NIH HHS R21 AI102782NIAID NIH HHS U19 AI096113NIDA NIH HHS DP1 DA036502NIGMS NIH HHS P50 GM081879NIGMS NIH HHS P50 GM082250
6 · The paper itself

Abstract

The progressive depletion of quiescent "bystander" CD4 T cells, which are nonpermissive to HIV infection, is a principal driver of the acquired immunodeficiency syndrome (AIDS). These cells undergo abortive infection characterized by the cytosolic accumulation of incomplete HIV reverse transcripts. These viral DNAs are sensed by an unidentified host sensor that triggers an innate immune response, leading to caspase-1 activation and pyroptosis. Using unbiased proteomic and targeted biochemical approaches, as well as two independent methods of lentiviral short hairpin RNA-mediated gene knockdown in primary CD4 T cells, we identify interferon-γ-inducible protein 16 (IFI16) as a host DNA sensor required for CD4 T cell death due to abortive HIV infection. These findings provide insights into a key host pathway that plays a central role in CD4 T cell depletion during disease progression to AIDS.

Indexed as

Acquired Immunodeficiency SyndromeApoptosisCD4-Positive T-LymphocytesCells, CulturedDNA-Binding ProteinsDNA, ViralGene Knockdown TechniquesHEK293 CellsHIV-1HumansImmunity, InnateLymphocyte DepletionNuclear ProteinsPalatine TonsilPhosphoproteinsRNA, Small InterferingDNA-Binding ProteinsDNA, ViralIFI16 protein, humanNuclear ProteinsPhosphoproteinsRNA, Small Interfering

Identifiers

PMID24356113
PMCPMC3976200
OpenAlexW2079716935

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.