Evidence map›Paper›PMID 24355261›Full record

ReviewUltramicroscopy2014

Correlative cryogenic tomography of cells using light and soft x-rays.

Elizabeth A Smith, Bertrand P Cinquin, Myan Do, Gerry McDermott, Mark A Le Gros, Carolyn A Larabell

Open access · greenAbstract readReview
In one paragraph

Review in Ultramicroscopy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Soft X-ray tomography: virtual sculptures from cell cultures.Current opinion in structural biology · 2019
    Review
  3. Article
  4. Aberration-corrected cryoimmersion light microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Imaging and characterizing cells using tomography.Archives of biochemistry and biophysics · 2015
    Review
  11. Article
  12. Review
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Elizabeth A SmithDepartment of Anatomy, School of Medicine, University of California San Francisco, San Francisco, CA, United States; National Center for X-ray Tomography, Advanced Light Source, Berkeley, CA, United States.
Bertrand P CinquinDepartment of Anatomy, School of Medicine, University of California San Francisco, San Francisco, CA, United States; National Center for X-ray Tomography, Advanced Light Source, Berkeley, CA, United States.
Myan DoDepartment of Anatomy, School of Medicine, University of California San Francisco, San Francisco, CA, United States; National Center for X-ray Tomography, Advanced Light Source, Berkeley, CA, United States.
Gerry McDermottDepartment of Anatomy, School of Medicine, University of California San Francisco, San Francisco, CA, United States; National Center for X-ray Tomography, Advanced Light Source, Berkeley, CA, United States.
Mark A Le GrosDepartment of Anatomy, School of Medicine, University of California San Francisco, San Francisco, CA, United States; Physical BioSciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States; National Center for X-ray Tomography, Advanced Light Source, Berkeley, CA, United States. Electronic address: MALegros@lbl.gov.
Carolyn A LarabellDepartment of Anatomy, School of Medicine, University of California San Francisco, San Francisco, CA, United States; Physical BioSciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States; National Center for X-ray Tomography, Advanced Light Source, Berkeley, CA, United States. Electronic address: carolyn.larabell@ucsf.edu.
Advanced Light SourceUniversity of California, San Francisco · US

Funding

VIRUS-INDUCED STRUCTURAL ALTERATIONS OF NUCLEUSP41RR019664 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LARABELL, CAROLYN A · 2004 to 2011
$8.2M
TrainingP41GM103445 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LARABELL, CAROLYN A · 2012 to 2019
$8.2M
3D Cryo X ray Microscopy of Whole CellsR01GM063948 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI LARABELL, CAROLYN A · 2001 to 2005
$1.3M
NCRR NIH HHS P41 RR019664NCRR NIH HHS P41RR019664NIGMS NIH HHS GM63948NIGMS NIH HHS P41 GM103445NIGMS NIH HHS R01 GM063948
6 · The paper itself

Abstract

Correlated imaging is the process of imaging a specimen with two complementary modalities, and then combining the two data sets to create a highly informative, composite view. A recent implementation of this concept has been the combination of soft x-ray tomography (SXT) with fluorescence cryogenic microscopy (FCM). SXT-FCM is used to visualize cells that are held in a near-native, cryopreserved. The resultant images are, therefore, highly representative of both the cellular architecture and molecular organization in vivo. SXT quantitatively visualizes the cell and sub-cellular structures; FCM images the spatial distribution of fluorescently labeled molecules. Here, we review the characteristics of SXT-FCM, and briefly discuss how this method compares with existing correlative imaging techniques. We also describe how the incorporation of a cryo-rotation stage into a cryogenic fluorescence microscope allows acquisition of fluorescence cryogenic tomography (FCT) data. FCT is optimally suited for correlation with SXT, since both techniques image the specimen in 3-D, potentially with similar, isotropic spatial resolution.

Indexed as

Cryoelectron MicroscopyImaging, Three-DimensionalLightMicroscopy, ConfocalMicroscopy, FluorescenceTomography, X-Ray ComputedX-RaysCell structureImagingMolecular localization

Identifiers

PMID24355261
PMCPMC4013260
OpenAlexW1991269430

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.