Evidence map›Paper›PMID 24355176›Full record

ArticleReproductive toxicology (Elmsford, N.Y.)2014

Eye-specific gene expression following embryonic ethanol exposure in zebrafish: roles for heat shock factor 1.

Bhavani Kashyap, Laurel Pegorsch, Ruth A Frey, Chi Sun, Eric A Shelden, Deborah L Stenkamp

Open access · greenAbstract read
In one paragraph

Article in Reproductive toxicology (Elmsford, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Effect of Tempeh on Gut Microbiota and Anti-Stress Activity in Zebrafish.International journal of molecular sciences · 2021
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Bhavani KashyapDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, United States; Neuroscience Graduate Program, University of Idaho, Moscow, ID 83844, United States.
Laurel PegorschDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, United States.
Ruth A FreyDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, United States.
Chi SunDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, United States; Neuroscience Graduate Program, University of Idaho, Moscow, ID 83844, United States.
Eric A SheldenSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, United States; Center for Reproductive Biology, University of Idaho, Moscow, ID 83844, United States.
Deborah L StenkampDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, United States; Neuroscience Graduate Program, University of Idaho, Moscow, ID 83844, United States; Center for Reproductive Biology, University of Idaho, Moscow, ID 83844, United States. Electronic address: dstenkam@uidaho.edu.
University of Idaho · US

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Carolyn Hovde Bohach · 2012 to 2026
$59.8M
UNDERGRADUATE COLLEGE OUTREACH PROGRAMP20RR016454 · NCRR · UNIVERSITY OF IDAHO · PI HOVDE, CAROLYN J · 2001 to 2011
$35.3M
TRANSCRIPTIONAL ATTENUATION OF THE TYPE I INTERFERON RESPONSE BY RHINOVIRUSP20RR015587 · NCRR · UNIVERSITY OF IDAHO · PI MCGUIRE, MARK ADAM · 2000 to 2009
$19.0M
Patterning Genes in Retinal DevelopmentR01EY012146 · NEI · UNIVERSITY OF IDAHO · PI Deborah L Stenkamp · 2004 to 2026
$6.7M
NCRR NIH HHS P20 RR015587NCRR NIH HHS P20 RR016454NEI NIH HHS R01 EY012146NIGMS NIH HHS P20 GM103408
6 · The paper itself

Abstract

The mechanisms through which ethanol exposure results in developmental defects remain unclear. We used the zebrafish model to elucidate eye-specific mechanisms that underlie ethanol-mediated microphthalmia (reduced eye size), through time-series microarray analysis of gene expression within eyes of embryos exposed to 1.5% ethanol. 62 genes were differentially expressed (DE) in ethanol-treated as compared to control eyes sampled during retinal neurogenesis (24-48 h post-fertilization). The EDGE (extraction of differential gene expression) algorithm identified >3000 genes DE over developmental time in ethanol-exposed eyes as compared to controls. The DE lists included several genes indicating a mis-regulated cellular stress response due to ethanol exposure. Combined treatment with sub-threshold levels of ethanol and a morpholino targeting heat shock factor 1 mRNA resulted in microphthalmia, suggesting convergent molecular pathways. Thermal preconditioning partially prevented ethanol-mediated microphthalmia while maintaining Hsf-1 expression. These data suggest roles for reduced Hsf-1 in mediating microphthalmic effects of embryonic ethanol exposure.

Indexed as

AnimalsEmbryo, NonmammalianEthanolEyeGene Expression ProfilingGene Expression Regulation, DevelopmentalHeat Shock Transcription FactorsMicrophthalmosOligonucleotide Array Sequence AnalysisTranscription FactorsZebrafishZebrafish ProteinsEthanolHeat Shock Transcription Factorshsf1 protein, zebrafishTranscription FactorsZebrafish ProteinsEthanolEyeFetal alcohol syndromeHeat shock factorHeat shock proteinMicroarrayRetinaZebrafish

Identifiers

PMID24355176
PMCPMC3918430
OpenAlexW2086704081

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.