Evidence map›Paper›PMID 24353061›Full record

ArticleDevelopment (Cambridge, England)2014

The LIM and POU homeobox genes ttx-3 and unc-86 act as terminal selectors in distinct cholinergic and serotonergic neuron types.

Feifan Zhang, Abhishek Bhattacharya, Jessica C Nelson, Namiko Abe, Patricia Gordon, Carla Lloret-Fernandez, Miren Maicas, Nuria Flames, Richard S Mann, Daniel A Colón-Ramos and 1 more

Open access · greenAbstract read
In one paragraph

Article in Development (Cambridge, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Hungry for Knowledge: Octopamine Signaling Regulates Hunger-Enhanced Olfactory Learning.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Article
  4. The dopaminergic system ofRoyal Society open science · 2025
    Review
  5. Almost 40 years of studying homeobox genes in C. elegans.Development (Cambridge, England) · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
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  14. Article
  15. Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Transcriptional regulation of neuronal identity.The European journal of neuroscience · 2022
    Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Feifan ZhangDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, NY 10032, USA.
Abhishek Bhattacharya
Jessica C Nelson
Namiko Abe
Patricia Gordon
Carla Lloret-Fernandez
Miren Maicas
Nuria Flames
Richard S Mann
Daniel A Colón-Ramos
Oliver Hobert
Columbia University Irving Medical Center · USInstituto de Biomedicina de Valencia · ESYale University · US

Funding

LIM HOMEOBOX GENE LIM-6 IN MOTOR NEURON DIFFERENTIATIONR01NS039996 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Oliver Hobert · 2001 to 2026
$6.8M
Development and Function of an Adult Locomotion Circuit in DrosophilaR01NS070644 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANN, RICHARD S · 2010 to 2024
$6.2M
MOLECULAR GENETICS OF SEGMENT IDENTITYR01GM054510 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANN, RICHARD S · 1996 to 2015
$5.5M
Cellular and molecular mechanisms that temporally and spatially restrict synapticR01NS076558 · NINDS · YALE UNIVERSITY · PI COLON-RAMOS, DANIEL A · 2012 to 2022
$4.1M
Genetic analysis of dopaminergic neuron specification in C.elegansR01NS050266 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HOBERT, OLIVER · 2004 to 2013
$3.4M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM054510NINDS NIH HHS R01 NS039996NINDS NIH HHS R01NS039996-05NINDS NIH HHS R01 NS050266NINDS NIH HHS R01NS050266-03NINDS NIH HHS R01 NS070644NINDS NIH HHS R01NS070644NINDS NIH HHS R01 NS076558NINDS NIH HHS R01NS076558
6 · The paper itself

Abstract

Transcription factors that drive neuron type-specific terminal differentiation programs in the developing nervous system are often expressed in several distinct neuronal cell types, but to what extent they have similar or distinct activities in individual neuronal cell types is generally not well explored. We investigate this problem using, as a starting point, the C. elegans LIM homeodomain transcription factor ttx-3, which acts as a terminal selector to drive the terminal differentiation program of the cholinergic AIY interneuron class. Using a panel of different terminal differentiation markers, including neurotransmitter synthesizing enzymes, neurotransmitter receptors and neuropeptides, we show that ttx-3 also controls the terminal differentiation program of two additional, distinct neuron types, namely the cholinergic AIA interneurons and the serotonergic NSM neurons. We show that the type of differentiation program that is controlled by ttx-3 in different neuron types is specified by a distinct set of collaborating transcription factors. One of the collaborating transcription factors is the POU homeobox gene unc-86, which collaborates with ttx-3 to determine the identity of the serotonergic NSM neurons. unc-86 in turn operates independently of ttx-3 in the anterior ganglion where it collaborates with the ARID-type transcription factor cfi-1 to determine the cholinergic identity of the IL2 sensory and URA motor neurons. In conclusion, transcription factors operate as terminal selectors in distinct combinations in different neuron types, defining neuron type-specific identity features.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationCholinergic NeuronsGene Expression Regulation, DevelopmentalGenes, HelminthHomeodomain ProteinsInterneuronsLarvaNeurogenesisNeuronsNeuropeptidesPOU Domain FactorsSerotonergic NeuronsTranscription FactorsCaenorhabditis elegans ProteinsCFI-1 protein, C elegansHomeodomain ProteinsNeuropeptidesPOU Domain FactorsTranscription FactorsTTX-3 protein, C elegansunc-86 protein, C elegansCaenorhabditis elegansHomeoboxNeuron differentiation

Identifiers

PMID24353061
PMCPMC3879818
OpenAlexW2097639632

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.