Evidence map›Paper›PMID 24353039›Full record

ArticleWorld journal of microbiology & biotechnology2014

Characterization of a novel cold-active esterase isolated from swamp sediment metagenome.

Sohyeon Seo, Young-Seok Lee, Sang-Hong Yoon, Soo-Jin Kim, Jae Youl Cho, Bum-Soo Hahn, Bon-Sung Koo, Chang-Muk Lee

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In one paragraph

Article in World journal of microbiology & biotechnology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Sohyeon SeoMetabolic Engineering Division, National Academy of Agricultural Science, Rural Development Administration, Suwon, 441-707, Korea.
Young-Seok Lee
Sang-Hong Yoon
Soo-Jin Kim
Jae Youl Cho
Bum-Soo Hahn
Bon-Sung Koo
Chang-Muk Lee
National Academy of Agricultural Science · KRRural Development Administration · KRSungkyunkwan University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A functional screen of a metagenomic library from "Upo" swamp sediment in Korea identified a gene EstL28, the product of which displayed lipolytic properties on a tributyrin-supplemented medium. The EstL28 sequence encodes a 290 amino acid protein (designated as EstL28), with a predicted molecular weight of 31.3 kDa. The encoded EstL28 protein exhibited the highest sequence similarity (45 %) to a hydrolase found in Streptococcus sanguinis. Phylogenetic analysis indicated that EstL28 belongs to a currently uncharacterized family of esterases. Within the conserved α/β-hydrolase 6 domain, the EstL28 retains the catalytic triad Ser₁₀₃-Asp₂₄₈-His₂₆₈ that is typical of esterases. The Ser103 residue in the catalytic triad is located in the consensus pentapeptide motif GXSXG. The purified EstL28 enzyme worked optimally at 35 °C and pH 8.5 and remained stable at temperatures lower than 20 °C. The catalytic activity of EstL28 was maximal with p-nitrophenyl butyrate, indicating that it was an esterase. This enzyme also exhibited stable activity in the presence of methanol, ethanol, isopropanol, and dimethyl sulfoxide. Therefore, the level of stability in organic solvents and cold temperature suggests that EstL28 has potential for many biotechnological applications.

Indexed as

MetagenomeButyratesCluster AnalysisCold TemperatureEnzyme StabilityEsterasesGeologic SedimentsHydrogen-Ion ConcentrationKineticsKoreaMolecular WeightPhylogenySequence Homology, Amino AcidStreptococcusSubstrate SpecificityWetlands4-nitrophenyl butyrateButyratesEsterases

Identifiers

PMID24353039
OpenAlexW2137203709

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.