Evidence map›Paper›PMID 24352945›Full record

ArticleProceedings. Biological sciences2014

Biodiversity and multifunctionality in a microbial community: a novel theoretical approach to quantify functional redundancy.

Takeshi Miki, Taichi Yokokawa, Kazuaki Matsui

Abstract read
In one paragraph

Article in Proceedings. Biological sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Diversity of lake bacteria promotes human echovirus inactivation.Applied and environmental microbiology · 2025
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  11. Microorganisms · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Takeshi MikiInstitute of Oceanography, National Taiwan University, , Number 1, Section 4 Roosevelt Road, Taipei 10617, Taiwan, Republic of China, Center for Marine Environmental Studies (CMES), Ehime University, , 3 Bunkyo-cho, Matsuyama, Ehime 790-8577, Japan, Laboratory of Environmental Biological Science, Faculty of Science and Technology, Kinki University, , 3-4-1 Kowakae Higashiosaka, Osaka 577-8502, Japan.
Taichi Yokokawa
Kazuaki Matsui

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ecosystems have a limited buffering capacity of multiple ecosystem functions against biodiversity loss (i.e. low multifunctional redundancy). We developed a novel theoretical approach to evaluate multifunctional redundancy in a microbial community using the microbial genome database (MBGD) for comparative analysis. In order to fully implement functional information, we defined orthologue richness in a community, each of which is a functionally conservative evolutionary unit in genomes, as an index of community multifunctionality (MF). We constructed a graph of expected orthologue richness in a community (MF) as a function of species richness (SR), fit the power function to SR (i.e. MF = cSR(a)), and interpreted the higher exponent a as the lower multifunctional redundancy. Through a microcosm experiment, we confirmed that MF defined by orthologue richness could predict the actual multiple functions. We simulated random and non-random community assemblages using full genomic data of 478 prokaryotic species in the MBGD, and determined that the exponent in microbial communities ranged from 0.55 to 0.75. This exponent range provided a quantitative estimate that a 6.6-8.9% loss limit in SR occurred in a microbial community for an MF reduction no greater than 5%, suggesting a non-negligible initial loss effect of microbial diversity on MF.

Indexed as

BiodiversityModels, BiologicalComputer SimulationMicrobiotaSpecies Specificityaccumulation curveecosystem functionmicrobial diversitymultifunctional redundancyorthologue richnessspecies loss

Identifiers

PMID24352945
PMCPMC3871314

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.