Evidence map›Paper›PMID 24352440›Full record

ArticleJournal of virology2014

Dispersed and conserved hydrophobic residues of HIV-1 Vif are essential for CBFβ recruitment and A3G suppression.

Xiaohong Zhou, Xue Han, Ke Zhao, Juan Du, Sean L Evans, Hong Wang, Peng Li, Wenwen Zheng, Yajuan Rui, Jian Kang and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  6. Review
  7. Review
  8. Article
  9. Structural perspectives on HIV-1 Vif and APOBEC3 restriction factor interactions.Protein science : a publication of the Protein Society · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Xiaohong ZhouSchool of Life Sciences, Tianjin University, Tianjin, China.
Xue Han
Ke Zhao
Juan Du
Sean L Evans
Hong Wang
Peng Li
Wenwen Zheng
Yajuan Rui
Jian Kang
Xiao-Fang Yu
Jilin University · CNFirst Hospital of Jilin University · CNJohns Hopkins University · USTianjin University · CN

Funding

A novel allele influencing HIV infection among injection drug usersR01DA026150 · NIDA · JOHNS HOPKINS UNIVERSITY · PI YU, XIAO-FANG · 2008 to 2012
$1.6M
Identification and characterization of novel anti-HIV inhibitorsR21AI087192 · NIAID · JOHNS HOPKINS UNIVERSITY · PI YU, XIAO-FANG · 2010 to 2011
$449k
Identification of novel anti-HIV inhibitors based on Vif-E3 activityR21AI102798 · NIAID · JOHNS HOPKINS UNIVERSITY · PI MARKHAM, RICHARD B. · 2013 to 2014
$431k
Role of Cul5 E3 Ubiquitin ligasae in HIV Vif function: A novel regulatorR56AI062644 · NIAID · JOHNS HOPKINS UNIVERSITY · PI YU, XIAO-FANG · 2010 to 2010
$369k
Interaction between HIV-1 Vif and a Host Key Immune Regulator ComponentF31AI091326 · NIAID · JOHNS HOPKINS UNIVERSITY · PI EVANS, SEAN LAMONTE · 2011 to 2012
$84k
NIAID NIH HHS 2R56AI62644-6NIAID NIH HHS 5R21AI087192-02NIAID NIH HHS F31 AI091326NIAID NIH HHS R21 AI087192NIAID NIH HHS R21 AI102798NIAID NIH HHS R56 AI062644NIDA NIH HHS 5R01DA026150-04NIDA NIH HHS R01 DA026150
6 · The paper itself

Abstract

unlabelledCBFβ was recently found to be a key regulator of the ability of human immunodeficiency virus type 1 (HIV-1) Vif to overcome host antiviral APOBEC3 proteins. However, the detailed molecular requirements for the Vif-CBFβ interaction are still not clear. Here, we mapped the minimum Vif domain required for CBFβ binding. In terms of CBFβ binding, the Vif N terminus was very sensitive to deletions. We determined that the Vif fragment from residues 5 to 126 was sufficient to form a stable complex with CBFβ in vitro. We also observed that ionic interactions were not the main contributor to the interaction between Vif and CBFβ. Instead, hydrophobic interactions were important for maintaining the Vif-CBFβ complex, since it could be disrupted by nonionic detergent. Site-directed mutagenesis of conserved hydrophobic amino acids revealed novel residues in Vif that were important for CBFβ binding and APOBEC3 inactivation. At least part of the well-characterized HCCH domain (residues 108 to 139) was required to form a stable Vif-CBFβ complex. Thus, the HCCH motif may have a dual role in binding both Cul5 and CBFβ. Considering the importance of Vif in HIV-1 infection, this unique Vif-CBFβ interaction represents an attractive pharmacological intervention target against HIV-1. IMPORTANCE: Vif-induced APOBEC3 protein degradation was the first host antiviral mechanism against HIV-1/simian immunodeficiency virus to be revealed, yet details regarding which proteins are degraded are not fully demonstrated. Recently, host cellular factor CBFβ was found to be essential for Vif to function and promote viral infectivity. In this study, we present more critical information on the Vif-CBFβ interaction by revealing that hydrophobicity contributes the most to the Vif-CBFβ interaction and locating several novel hydrophobic sites (tryptophans and phenylalanines) that are conserved among Vif proteins from different lentiviruses and essential for Vif binding to CBFβ. Mutations on these sites result in a reduced/abolished Vif-CBFβ interaction, leading to the attenuated potency of Vif on both inducing the degradation of antiviral factors like APOBEC3G and promoting HIV-1 infectivity. Therefore, information from this study will help people to further understand how Vif acts against host antiviral mechanism, which is important for novel anti-HIV-1 drug development.

Indexed as

Protein Interaction Domains and MotifsAmino Acid SequenceConserved SequenceCore Binding Factor beta SubunitCytidine DeaminaseHIV-1HumansHydrophobic and Hydrophilic InteractionsMutationProtein Bindingvif Gene Products, Human Immunodeficiency VirusCore Binding Factor beta SubunitCytidine Deaminasevif Gene Products, Human Immunodeficiency Virus

Identifiers

PMID24352440
PMCPMC3958093
OpenAlexW2099598838

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.