Evidence map›Paper›PMID 24351288›Full record

ArticleCancer research2014

Activation of the NOTCH pathway in head and neck cancer.

Wenyue Sun, Daria A Gaykalova, Michael F Ochs, Elizabeth Mambo, Demetri Arnaoutakis, Yan Liu, Myriam Loyo, Nishant Agrawal, Jason Howard, Ryan Li and 16 more

Abstract read
In one paragraph

Article in Cancer research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 199 citations in OpenAlex.

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67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 3 institutions in 1 country.

Wenyue SunAuthors' Affiliations: Departments of Otolaryngology-Head and Neck Surgery, Oncology and Health Science Informatics, Surgery, Oncology, and Pathology, Johns Hopkins Medical Institutions; Milton J. Dance Head and Neck Center, Greater Baltimore Medical Center, Baltimore, Maryland; and Asuragen Inc., Austin, Texas.
Daria A Gaykalova
Michael F Ochs
Elizabeth Mambo
Demetri Arnaoutakis
Yan Liu
Myriam Loyo
Nishant Agrawal
Jason Howard
Ryan Li
Sun Ahn
Elana Fertig
David Sidransky
Jeffery Houghton
Kalyan Buddavarapu
Tiffany Sanford
Ashish Choudhary
Will Darden
Alex Adai
Gary Latham
Justin Bishop
Rajni Sharma
William H Westra
Patrick Hennessey
Christine H Chung
Joseph A Califano
Asuragen (United States) · USJohns Hopkins University · USGreater Baltimore Medical Center · US

Funding

TUMOR SUPPRESOR GENE PROMOTER HYPERMETHYLATION FOR DETECTION OF HEAD AND NECKP50DE019032 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 2007 to 2016
$27.1M
GENETIC ALTERATIONS AS DIAGNOSTIC AND PROGNOSTIC BIOMARKR01DE013152 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI KOCH, WAYNE M · 1999 to 2013
$5.0M
Integrative Pathway Analysis of Eqigenomic/transcriptional Alteration in HNSCCRC1DE020324 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI CALIFANO, JOSEPH A · 2009 to 2010
$918k
Validation of epigenetic biomarkers of head and neck cancer progression--OLDRC2DE020789 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI CALIFANO, JOSEPH A · 2009 to 2010
$546k
NIDCR NIH HHS P50 DE 019032NIDCR NIH HHS P50 DE019032NIDCR NIH HHS R01 DE013152NIDCR NIH HHS RC1 DE020324NIDCR NIH HHS RC1DE020324NIDCR NIH HHS RC2 DE020789NIDCR NIH HHS RC2DE020789
6 · The paper itself

Abstract

NOTCH1 mutations have been reported to occur in 10% to 15% of head and neck squamous cell carcinomas (HNSCC). To determine the significance of these mutations, we embarked upon a comprehensive study of NOTCH signaling in a cohort of 44 HNSCC tumors and 25 normal mucosal samples through a set of expression, copy number, methylation, and mutation analyses. Copy number increases were identified in NOTCH pathway genes, including the NOTCH ligand JAG1. Gene set analysis defined a differential expression of the NOTCH signaling pathway in HNSCC relative to normal tissues. Analysis of individual pathway-related genes revealed overexpression of ligands JAG1 and JAG2 and receptor NOTCH3. In 32% of the HNSCC examined, activation of the downstream NOTCH effectors HES1/HEY1 was documented. Notably, exomic sequencing identified 5 novel inactivating NOTCH1 mutations in 4 of the 37 tumors analyzed, with none of these tumors exhibiting HES1/HEY1 overexpression. Our results revealed a bimodal pattern of NOTCH pathway alterations in HNSCC, with a smaller subset exhibiting inactivating NOTCH1 receptor mutations but a larger subset exhibiting other NOTCH1 pathway alterations, including increases in expression or gene copy number of the receptor or ligands as well as downstream pathway activation. Our results imply that therapies that target the NOTCH pathway may be more widely suitable for HNSCC treatment than appreciated currently.

Indexed as

Carcinoma, Squamous CellDNA MethylationGene DosageGene Expression ProfilingGene Expression Regulation, NeoplasticHead and Neck NeoplasmsHumansMicroarray AnalysisMucous MembraneMutationPromoter Regions, GeneticReceptor, Notch1Signal TransductionSquamous Cell Carcinoma of Head and NeckTranscriptional ActivationTumor Cells, CulturedReceptor, Notch1

Identifiers

PMID24351288
PMCPMC3944644
OpenAlexW2137662527

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.