Evidence map›Paper›PMID 24350795›Full record

ArticleBMC cancer2013

Promoter methylation of Wnt-antagonists in polypoid and nonpolypoid colorectal adenomas.

Quirinus J M Voorham, Jerry Janssen, Marianne Tijssen, Suzanne Snellenberg, Sandra Mongera, Nicole C T van Grieken, Heike Grabsch, Martin Kliment, Bjorn J Rembacken, Chris J J Mulder and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Quirinus J M Voorham
Jerry Janssen
Marianne Tijssen
Suzanne Snellenberg
Sandra Mongera
Nicole C T van Grieken
Heike Grabsch
Martin Kliment
Bjorn J Rembacken
Chris J J Mulder
Manon van Engeland
Gerrit A Meijer
Renske D M Steenbergen
Beatriz CarvalhoDepartment of Pathology, VU University Medical Center, PO Box 7057, 1007 MB Amsterdam, The Netherlands. b.carvalho@vumc.nl.
Amsterdam UMC Location VUmc · NLLeeds General Infirmary · GBMaastricht University · NLUniversity of Leeds · GBVitkovice - Research and Development (Czechia) · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNonpolypoid adenomas are a subgroup of colorectal adenomas that have been associated with a more aggressive clinical behaviour compared to their polypoid counterparts. A substantial proportion of nonpolypoid and polypoid adenomas lack APC mutations, APC methylation or chromosomal loss of the APC locus on chromosome 5q, suggesting the involvement of other Wnt-pathway genes. The present study investigated promoter methylation of several Wnt-pathway antagonists in both nonpolypoid and polypoid adenomas.

methodsQuantitative methylation-specific PCR (qMSP) was used to evaluate methylation of four Wnt-antagonists, SFRP2, WIF-1, DKK3 and SOX17 in 18 normal colorectal mucosa samples, 9 colorectal cancer cell lines, 18 carcinomas, 44 nonpolypoid and 44 polypoid adenomas. Results were integrated with previously obtained data on APC mutation, methylation and chromosome 5q status from the same samples.

resultsIncreased methylation of all genes was found in the majority of cell lines, adenomas and carcinomas compared to normal controls. WIF-1 and DKK3 showed a significantly lower level of methylation in nonpolypoid compared to polypoid adenomas (p < 0.01). Combining both adenoma types, a positive trend between APC mutation and both WIF-1 and DKK3 methylation was observed (p < 0.05).

conclusionsMethylation of Wnt-pathway antagonists represents an additional mechanism of constitutive Wnt-pathway activation in colorectal adenomas. Current results further substantiate the existence of partially alternative Wnt-pathway disruption mechanisms in nonpolypoid compared to polypoid adenomas, in line with previous observations.

Indexed as

DNA MethylationPromoter Regions, GeneticAdaptor Proteins, Signal TransducingAdenomaAdenomatous Polyposis Coli ProteinCase-Control StudiesCell Line, TumorChemokinesColorectal NeoplasmsGene Expression Regulation, NeoplasticHumansIntercellular Signaling Peptides and ProteinsMembrane ProteinsPolyploidyRepressor ProteinsSecreted Frizzled-Related ProteinsAdaptor Proteins, Signal TransducingAdenomatous Polyposis Coli ProteinChemokinesDKK3 protein, humanIntercellular Signaling Peptides and ProteinsMembrane ProteinsRepressor ProteinsSecreted Frizzled-Related ProteinsSFRP2 protein, humanSOX17 protein, humanSOXF Transcription FactorsWIF1 protein, human

Identifiers

PMID24350795
PMCPMC3878219
OpenAlexW2020178657

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.