Evidence map›Paper›PMID 24349586›Full record

ArticlePLoS neglected tropical diseases2013

Laboratory-based prospective surveillance for community outbreaks of Shigella spp. in Argentina.

María R Viñas, Ezequiel Tuduri, Alicia Galar, Katherine Yih, Mariana Pichel, John Stelling, Silvina P Brengi, Anabella Della Gaspera, Claudia van der Ploeg, Susana Bruno and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  11. Use of WHONET-SaTScan system for simulated real-time detection of antimicrobial resistance clusters in a hospital in Italy, 2012 to 2014.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2017
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  17. Clinical microbiology informatics.Clinical microbiology reviews · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

María R ViñasDepartamento Bacteriología, Instituto Nacional de Enfermedades Infecciosas ANLIS "Dr C. G. Malbrán", Buenos Aires, Argentina.
Ezequiel TuduriDepartamento Bacteriología, Instituto Nacional de Enfermedades Infecciosas ANLIS "Dr C. G. Malbrán", Buenos Aires, Argentina.
Alicia GalarDepartment of Medicine, Brigham and Women's Hospital, World Health Organization Collaborating Centre for Surveillance of Antimicrobial Resistance, Boston, Massachusetts, United States of America.
Katherine YihDepartment of Population Medicine, Harvard Medical School and Harvard Pilgrim Health Care Institute, Boston, Massachusetts, United States of America.
Mariana PichelDepartamento Bacteriología, Instituto Nacional de Enfermedades Infecciosas ANLIS "Dr C. G. Malbrán", Buenos Aires, Argentina.
John StellingDepartment of Medicine, Brigham and Women's Hospital, World Health Organization Collaborating Centre for Surveillance of Antimicrobial Resistance, Boston, Massachusetts, United States of America.
Silvina P BrengiDepartamento Bacteriología, Instituto Nacional de Enfermedades Infecciosas ANLIS "Dr C. G. Malbrán", Buenos Aires, Argentina.
Anabella Della GasperaDepartamento Bacteriología, Instituto Nacional de Enfermedades Infecciosas ANLIS "Dr C. G. Malbrán", Buenos Aires, Argentina.
Claudia van der PloegServicio de Antígenos y Antisueros. Instituto Nacional de Producción de Biológicos (INPB) - ANLIS "Dr Carlos G. Malbran", Buenos Aires, Argentina.
Susana BrunoServicio de Antígenos y Antisueros. Instituto Nacional de Producción de Biológicos (INPB) - ANLIS "Dr Carlos G. Malbran", Buenos Aires, Argentina.
Ariel RogéServicio de Antígenos y Antisueros. Instituto Nacional de Producción de Biológicos (INPB) - ANLIS "Dr Carlos G. Malbran", Buenos Aires, Argentina.
María I CafferDepartamento Bacteriología, Instituto Nacional de Enfermedades Infecciosas ANLIS "Dr C. G. Malbrán", Buenos Aires, Argentina.
Martin KulldorffDepartment of Population Medicine, Harvard Medical School and Harvard Pilgrim Health Care Institute, Boston, Massachusetts, United States of America.
Marcelo GalasDepartamento Bacteriología, Instituto Nacional de Enfermedades Infecciosas ANLIS "Dr C. G. Malbrán", Buenos Aires, Argentina.
Group MIDAS - Argentina
Brigham and Women's Hospital · USHarvard University · US

Funding

Modeling Health System Infectious Disease DataU01GM076672 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, SUSAN S. · 2006 to 2010
$3.0M
WHONET: Tools for a Global Microbial Sensor NetworkR01GM103525 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI STELLING, JOHN · 2012 to 2016
$1.9M
WHONET for automated real-time multilevel global microbial surveillanceR01RR025040 · NCRR · BRIGHAM AND WOMEN'S HOSPITAL · PI STELLING, JOHN · 2008 to 2011
$1.4M
NCRR NIH HHS R01 RR025040NCRR NIH HHS RR025040NIGMS NIH HHS R01 GM103525NIGMS NIH HHS U01 GM076672NIGMS NIH HHS U01GM076672
6 · The paper itself

Abstract

backgroundTo implement effective control measures, timely outbreak detection is essential. Shigella is the most common cause of bacterial diarrhea in Argentina. Highly resistant clones of Shigella have emerged, and outbreaks have been recognized in closed settings and in whole communities. We hereby report our experience with an evolving, integrated, laboratory-based, near real-time surveillance system operating in six contiguous provinces of Argentina during April 2009 to March 2012. METHODOLOGY: To detect localized shigellosis outbreaks timely, we used the prospective space-time permutation scan statistic algorithm of SaTScan, embedded in WHONET software. Twenty three laboratories sent updated Shigella data on a weekly basis to the National Reference Laboratory. Cluster detection analysis was performed at several taxonomic levels: for all Shigella spp., for serotypes within species and for antimicrobial resistance phenotypes within species. Shigella isolates associated with statistically significant signals (clusters in time/space with recurrence interval ≥365 days) were subtyped by pulsed field gel electrophoresis (PFGE) using PulseNet protocols. PRINCIPAL

findingsIn three years of active surveillance, our system detected 32 statistically significant events, 26 of them identified before hospital staff was aware of any unexpected increase in the number of Shigella isolates. Twenty-six signals were investigated by PFGE, which confirmed a close relationship among the isolates for 22 events (84.6%). Seven events were investigated epidemiologically, which revealed links among the patients. Seventeen events were found at the resistance profile level. The system detected events of public health importance: infrequent resistance profiles, long-lasting and/or re-emergent clusters and events important for their duration or size, which were reported to local public health authorities. CONCLUSIONS/SIGNIFICANCE: The WHONET-SaTScan system may serve as a model for surveillance and can be applied to other pathogens, implemented by other networks, and scaled up to national and international levels for early detection and control of outbreaks.

Indexed as

Disease OutbreaksEpidemiological MonitoringArgentinaCluster AnalysisDysentery, BacillaryElectrophoresis, Gel, Pulsed-FieldHumansMicrobial Sensitivity TestsMolecular TypingSerotypingShigella

Identifiers

PMID24349586
PMCPMC3861122
OpenAlexW2032279038

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.