Evidence map›Paper›PMID 24349107›Full record

ArticlePloS one2013

Inhibition of DNA glycosylases via small molecule purine analogs.

Aaron C Jacobs, Marcus J Calkins, Ajit Jadhav, Dorjbal Dorjsuren, David Maloney, Anton Simeonov, Pawel Jaruga, Miral Dizdaroglu, Amanda K McCullough, R Stephen Lloyd

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Artificial targeting of the NEIL1 DNA glycosylase to the mitochondria.Environmental and molecular mutagenesis · 2024
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Enhanced cytarabine-induced killing in OGG1-deficient acute myeloid leukemia cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. An Excimer Clamp for Measuring Damaged-Base Excision by the DNA Repair Enzyme NTH1.Angewandte Chemie (International ed. in English) · 2020
    Article
  15. Inhibitors of DNA Glycosylases as Prospective Drugs.International journal of molecular sciences · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Fluorescent Probes of DNA Repair.ACS chemical biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Aaron C JacobsCenter for Research on Occupational and Environmental Toxicology, Oregon Health and Science University, Portland, Oregon, United States of America.
Marcus J CalkinsCenter for Research on Occupational and Environmental Toxicology, Oregon Health and Science University, Portland, Oregon, United States of America.
Ajit JadhavNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, United States of America.
Dorjbal DorjsurenNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, United States of America.
David MaloneyNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, United States of America.
Anton SimeonovNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, United States of America.
Pawel JarugaBiomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America.
Miral DizdarogluBiomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America.
Amanda K McCulloughCenter for Research on Occupational and Environmental Toxicology, Oregon Health and Science University, Portland, Oregon, United States of America ; Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, Oregon, United States of America.
R Stephen LloydCenter for Research on Occupational and Environmental Toxicology, Oregon Health and Science University, Portland, Oregon, United States of America ; Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, Oregon, United States of America.
Oregon Health & Science University · USNational Center for Advancing Translational Sciences · USNational Institutes of Health · USMaterial Measurement Laboratory · USNational Institute of Standards and Technology · US

Funding

NIH Chemical Genomics CenterZIBTR000004 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MCKEW, JOHN · 2012 to 2014
$52.3M
Synthetic Approaches to Carcinogen-Linked OligonucleotidesP01CA160032 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2012 to 2022
$14.0M
MODE OF ACTION OF ENVIRONMENTAL TOXICANTST32ES007060 · NIEHS · OREGON STATE UNIVERSITY · PI Jamie DeWitt, Siva Kumar Kolluri · 1985 to 2026
$11.6M
Training in the Molecular Basis of Skin/Mucosa PathobiologyT32CA106195 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI KULESZ-MARTIN, MOLLY F. · 2004 to 2018
$3.8M
DNA Repair Deficiency Associated with Obesity and the Metabolic SyndromeR01DK075974 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI LLOYD, R. STEPHEN · 2009 to 2013
$1.7M
NCI NIH HHS P01 CA160032NCI NIH HHS T32 CA106195NIDDK NIH HHS R01 DK075974NIEHS NIH HHS T32 ES007060
6 · The paper itself

Abstract

Following the formation of oxidatively-induced DNA damage, several DNA glycosylases are required to initiate repair of the base lesions that are formed. Recently, NEIL1 and other DNA glycosylases, including OGG1 and NTH1 were identified as potential targets in combination chemotherapeutic strategies. The potential therapeutic benefit for the inhibition of DNA glycosylases was validated by demonstrating synthetic lethality with drugs that are commonly used to limit DNA replication through dNTP pool depletion via inhibition of thymidylate synthetase and dihydrofolate reductase. Additionally, NEIL1-associated synthetic lethality has been achieved in combination with Fanconi anemia, group G. As a prelude to the development of strategies to exploit the potential benefits of DNA glycosylase inhibition, it was necessary to develop a reliable high-throughput screening protocol for this class of enzymes. Using NEIL1 as the proof-of-principle glycosylase, a fluorescence-based assay was developed that utilizes incision of site-specifically modified oligodeoxynucleotides to detect enzymatic activity. This assay was miniaturized to a 1536-well format and used to screen small molecule libraries for inhibitors of the combined glycosylase/AP lyase activities. Among the top hits of these screens were several purine analogs, whose postulated presence in the active site of NEIL1 was consistent with the paradigm of NEIL1 recognition and excision of damaged purines. Although a subset of these small molecules could inhibit other DNA glycosylases that excise oxidatively-induced DNA adducts, they could not inhibit a pyrimidine dimer-specific glycosylase.

Indexed as

AnimalsDeoxyribonuclease (Pyrimidine Dimer)DNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesEnzyme AssaysEnzyme InhibitorsFibroblastsHumansKineticsMiceOxidation-ReductionProtein BindingPurinesRecombinant ProteinsSmall Molecule LibrariesSubstrate SpecificityDeoxyribonuclease (Pyrimidine Dimer)DNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesEnzyme InhibitorsNEIL1 protein, humanNTHL1 protein, humanoxoguanine glycosylase 1, humanPurinesRecombinant ProteinsSmall Molecule Libraries

Identifiers

PMID24349107
PMCPMC3857224
OpenAlexW2058134568

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.