Evidence map›Paper›PMID 24349048›Full record

ArticlePloS one2013

Aphotic N2 fixation in the Eastern Tropical South Pacific Ocean.

Sophie Bonnet, Julien Dekaezemacker, Kendra A Turk-Kubo, Thierry Moutin, Robert M Hamersley, Olivier Grosso, Jonathan P Zehr, Douglas G Capone

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  12. Contribution of Heterotrophic Diazotrophs to NFrontiers in microbiology · 2022
    Article
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  14. Review
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  16. Article
  17. Revisiting the distribution of oceanic NNature communications · 2019
    Article
  18. Article
  19. Article
  20. Global Marine NFrontiers in microbiology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sophie BonnetMediterranean Institute of Oceanography, Institut de Recherche pour le Développement, Aix Marseille Université, Centre National de la Recherche Scientifique Marseille/Noumea, New Caledonia, France.
Julien DekaezemackerMediterranean Institute of Oceanography, Institut de Recherche pour le Développement, Aix Marseille Université, Centre National de la Recherche Scientifique Marseille/Noumea, New Caledonia, France.
Kendra A Turk-KuboDepartment of Ocean Sciences, University of California Santa Cruz, Santa Cruz, California, United States of America.
Thierry MoutinMediterranean Institute of Oceanography, Institut de Recherche pour le Développement, Aix Marseille Université, Centre National de la Recherche Scientifique Marseille/Noumea, New Caledonia, France.
Robert M HamersleyEnvironmental Studies, Soka University of America, Aliso Viejo, California, United States of America.
Olivier GrossoMediterranean Institute of Oceanography, Institut de Recherche pour le Développement, Aix Marseille Université, Centre National de la Recherche Scientifique Marseille/Noumea, New Caledonia, France.
Jonathan P ZehrDepartment of Ocean Sciences, University of California Santa Cruz, Santa Cruz, California, United States of America.
Douglas G CaponeDepartment of Biological Sciences, University of Southern California, Los Angeles, California, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We examined rates of N2 fixation from the surface to 2000 m depth in the Eastern Tropical South Pacific (ETSP) during El Niño (2010) and La Niña (2011). Replicated vertical profiles performed under oxygen-free conditions show that N2 fixation takes place both in euphotic and aphotic waters, with rates reaching 155 to 509 µmol N m(-2) d(-1) in 2010 and 24±14 to 118±87 µmol N m(-2) d(-1) in 2011. In the aphotic layers, volumetric N2 fixation rates were relatively low (<1.00 nmol N L(-1) d(-1)), but when integrated over the whole aphotic layer, they accounted for 87-90% of total rates (euphotic+aphotic) for the two cruises. Phylogenetic studies performed in microcosms experiments confirm the presence of diazotrophs in the deep waters of the Oxygen Minimum Zone (OMZ), which were comprised of non-cyanobacterial diazotrophs affiliated with nifH clusters 1K (predominantly comprised of α-proteobacteria), 1G (predominantly comprised of γ-proteobacteria), and 3 (sulfate reducing genera of the δ-proteobacteria and Clostridium spp., Vibrio spp.). Organic and inorganic nutrient addition bioassays revealed that amino acids significantly stimulated N2 fixation in the core of the OMZ at all stations tested and as did simple carbohydrates at stations located nearest the coast of Peru/Chile. The episodic supply of these substrates from upper layers are hypothesized to explain the observed variability of N2 fixation in the ETSP.

Indexed as

AlphaproteobacteriaClostridiumDeltaproteobacteriaGammaproteobacteriaNitrogen FixationPacific Ocean

Identifiers

PMID24349048
PMCPMC3861260

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.