Evidence map›Paper›PMID 24348200›Full record

ArticlePLoS biology2013

Translational profiling of clock cells reveals circadianly synchronized protein synthesis.

Yanmei Huang, Joshua A Ainsley, Leon G Reijmers, F Rob Jackson

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 78 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Octopamine receptors inFrontiers in molecular neuroscience · 2026
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  7. Uncovering the circadian transcriptome ofProceedings. Biological sciences · 2024
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  8. Activity Monitoring for Analysis of Sleep inCold Spring Harbor protocols · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Integration of Circadian Clock Information in theJournal of biological rhythms · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yanmei HuangDepartment of Neuroscience, Sackler School of Biomedical Sciences, Tufts University School of Medicine, Boston, Massachusetts, United States of America.
Joshua A AinsleyDepartment of Neuroscience, Sackler School of Biomedical Sciences, Tufts University School of Medicine, Boston, Massachusetts, United States of America.
Leon G ReijmersDepartment of Neuroscience, Sackler School of Biomedical Sciences, Tufts University School of Medicine, Boston, Massachusetts, United States of America.
F Rob JacksonDepartment of Neuroscience, Sackler School of Biomedical Sciences, Tufts University School of Medicine, Boston, Massachusetts, United States of America.
Tufts University · US

Funding

TUSM/T-NEMC CENTER FOR NEUROSCIENCE RESEARCH - Imaging CoreP30NS047243 · NINDS · TUFTS UNIVERSITY BOSTON · PI JACKSON, F ROB · 2003 to 2017
$10.0M
Studies of a Neural Pacemaker Output PathwayR01HL059873 · NHLBI · TUFTS UNIVERSITY BOSTON · PI JACKSON, F ROB · 1997 to 2011
$3.9M
Molecular Analysis of Functional Neural CircuitsDP2OD006446 · OD · TUFTS UNIVERSITY BOSTON · PI REIJMERS, LEON · 2009 to 2009
$2.5M
Glial Cell Regulation of Circadian BehaviorR01NS065900 · NINDS · TUFTS UNIVERSITY BOSTON · PI JACKSON, F ROB · 2010 to 2014
$1.8M
NHLBI NIH HHS R01 HL059873NHLBI NIH HHS R01 HL59873NIH HHS DP2 OD006446NINDS NIH HHS P30 NS047243NINDS NIH HHS R01 NS065900
6 · The paper itself

Abstract

Genome-wide studies of circadian transcription or mRNA translation have been hindered by the presence of heterogeneous cell populations in complex tissues such as the nervous system. We describe here the use of a Drosophila cell-specific translational profiling approach to document the rhythmic "translatome" of neural clock cells for the first time in any organism. Unexpectedly, translation of most clock-regulated transcripts--as assayed by mRNA ribosome association--occurs at one of two predominant circadian phases, midday or mid-night, times of behavioral quiescence; mRNAs encoding similar cellular functions are translated at the same time of day. Our analysis also indicates that fundamental cellular processes--metabolism, energy production, redox state (e.g., the thioredoxin system), cell growth, signaling and others--are rhythmically modulated within clock cells via synchronized protein synthesis. Our approach is validated by the identification of mRNAs known to exhibit circadian changes in abundance and the discovery of hundreds of novel mRNAs that show translational rhythms. This includes Tdc2, encoding a neurotransmitter synthetic enzyme, which we demonstrate is required within clock neurons for normal circadian locomotor activity.

Indexed as

Circadian RhythmProtein BiosynthesisAnimalsCLOCK ProteinsDrosophila melanogasterDrosophila ProteinsGene Expression RegulationMotor ActivityNADPNervous SystemNeuronsNeuropeptidesProteomeRNA, MessengerTranscriptomeTyrosine DecarboxylaseClk protein, DrosophilaCLOCK ProteinsDrosophila ProteinsNADPNeuropeptidespdf protein, DrosophilaProteomeRNA, MessengerTdc2 protein, DrosophilaTyrosine Decarboxylase

Identifiers

PMID24348200
PMCPMC3864454
OpenAlexW1972677800

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.