Evidence map›Paper›PMID 24347680›Full record

ArticleJournal of computational physics2013

A Bidirectional Coupling Procedure Applied to Multiscale Respiratory Modeling.

A P Kuprat, S Kabilan, J P Carson, R A Corley, D R Einstein

Abstract read
In one paragraph

Article in Journal of computational physics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Computational fluid dynamics modeling ofJournal of aerosol science · 2016
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Comparative computational modeling of airflows and vapor dosimetry in the respiratory tracts of rat, monkey, and human.Toxicological sciences : an official journal of the Society of Toxicology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

A P KupratFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA.
S KabilanFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA.
J P CarsonFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA.
R A CorleyFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA.
D R EinsteinFundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA.

Funding

3D IMAGING &COMPUTER MODEL OF THE RESPIRATORY TRACTR01HL073598 · NHLBI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI CORLEY, RICHARD A · 2004 to 2014
$17.6M
NHLBI NIH HHS R01 HL073598
6 · The paper itself

Abstract

In this study, we present a novel multiscale computational framework for efficiently linking multiple lower-dimensional models describing the distal lung mechanics to imaging-based 3D computational fluid dynamics (CFD) models of the upper pulmonary airways in order to incorporate physiologically appropriate outlet boundary conditions. The framework is an extension of the Modified Newton's Method with nonlinear Krylov accelerator developed by Carlson and Miller [1, 2, 3]. Our extensions include the retention of subspace information over multiple timesteps, and a special correction at the end of a timestep that allows for corrections to be accepted with verified low residual with as little as a single residual evaluation per timestep on average. In the case of a single residual evaluation per timestep, the method has zero additional computational cost compared to uncoupled or unidirectionally coupled simulations. We expect these enhancements to be generally applicable to other multiscale coupling applications where timestepping occurs. In addition we have developed a "pressure-drop" residual which allows for stable coupling of flows between a 3D incompressible CFD application and another (lower-dimensional) fluid system. We expect this residual to also be useful for coupling non-respiratory incompressible fluid applications, such as multiscale simulations involving blood flow. The lower-dimensional models that are considered in this study are sets of simple ordinary differential equations (ODEs) representing the compliant mechanics of symmetric human pulmonary airway trees. To validate the method, we compare the predictions of hybrid CFD-ODE models against an ODE-only model of pulmonary airflow in an idealized geometry. Subsequently, we couple multiple sets of ODEs describing the distal lung to an imaging-based human lung geometry. Boundary conditions in these models consist of atmospheric pressure at the mouth and intrapleural pressure applied to the multiple sets of ODEs. In both the simplified geometry and in the imaging-based geometry, the performance of the method was comparable to that of monolithic schemes, in most cases requiring only a single CFD evaluation per time step. Thus, this new accelerator allows us to begin combining pulmonary CFD models with lower-dimensional models of pulmonary mechanics with little computational overhead. Moreover, because the CFD and lower-dimensional models are totally separate, this framework affords great flexibility in terms of the type and breadth of the adopted lower-dimensional model, allowing the biomedical researcher to appropriately focus on model design.

Indexed as

computational fluid dynamicsKrylov subspacemodified Newton-Raphsonmultiscale couplingpulmonary airflows

Identifiers

PMID24347680
PMCPMC3856712

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.