Evidence map›Paper›PMID 24347514›Full record

ArticleInternational journal of cancer2014

Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response.

Érika Cosset, Tom J Petty, Valérie Dutoit, Samuel Cordey, Ismael Padioleau, Patricia Otten-Hernandez, Laurent Farinelli, Laurent Kaiser, Pascale Bruyère-Cerdan, Diderik Tirefort and 7 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of cancer, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  10. Immunotherapeutic Challenges for Pediatric Cancers.Molecular therapy oncolytics · 2019
    Review
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  12. Article
  13. Review
  14. Article
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  16. Tumour virology in the era of high-throughput genomics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Érika CossetLaboratory of Immunohematology, Hematology Unit, Department of Genetic and Laboratory Medicine, Geneva University Hospitals, University of Geneva, Switzerland.
Tom J Petty
Valérie Dutoit
Samuel Cordey
Ismael Padioleau
Patricia Otten-Hernandez
Laurent Farinelli
Laurent Kaiser
Pascale Bruyère-Cerdan
Diderik Tirefort
Soraya Amar El-Dusouqui
Zeynab Nayernia
Karl-Heinz Krause
Evgeny M Zdobnov
Pierre-Yves Dietrich
Emmanuel Rigal
Olivier Preynat-Seauve
University Hospital of Geneva · CHUniversity of Geneva · CHGeneva College · USL.A.C. (Switzerland) · CHSIB Swiss Institute of Bioinformatics · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glioblastoma is a deadly malignant brain tumor and one of the most incurable forms of cancer in need of new therapeutic targets. As some cancers are known to be caused by a virus, the discovery of viruses could open the possibility to treat, and perhaps prevent, such a disease. Although an association with viruses such as cytomegalovirus or Simian virus 40 has been strongly suggested, involvement of these and other viruses in the initiation and/or propagation of glioblastoma remains vague, controversial and warrants elucidation. To exhaustively address the association of virus and glioblastoma, we developed and validated a robust metagenomic approach to analyze patient biopsies via high-throughput sequencing, a sensitive tool for virus screening. In addition to traditional clinical diagnostics, glioblastoma biopsies were deep-sequenced and analyzed with a multistage computational pipeline to identify known or potentially discover unknown viruses. In contrast to the studies reporting the presence of viral signatures in glioblastoma, no common or recurring active viruses were detected, despite finding an antiviral-like type I interferon response in some specimens. Our findings highlight a discrete and non-specific viral signature and uncharacterized short RNA sequences in glioblastoma. This study provides new insights into glioblastoma pathogenesis and defines a general methodology that can be used for high-resolution virus screening and discovery in human cancers.

Indexed as

Antibodies, ViralBrain NeoplasmsCytomegalovirusGlioblastomaHigh-Throughput Nucleotide SequencingHumansImmunoglobulin GImmunoglobulin MInterferon Type IMetagenomicsAntibodies, ViralImmunoglobulin GImmunoglobulin MInterferon Type Iantiviral type I interferon responseglioblastoma multiformehigh-throughput sequencingmetagenomic analysisvirus discovery

Identifiers

PMID24347514
PMCPMC4235296
OpenAlexW1538376111

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.