Evidence map›Paper›PMID 24346498›Full record

ArticleHeredity2014

Relatedness severely impacts accuracy of marker-assisted selection for disease resistance in hybrid wheat.

M Gowda, Y Zhao, T Würschum, C F H Longin, T Miedaner, E Ebmeyer, R Schachschneider, E Kazman, J Schacht, J-P Martinant and 2 more

Abstract read
In one paragraph

Article in Heredity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

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  12. The potential of hybrid breeding to enhance leaf rust and stripe rust resistance in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Hybrid wheat: past, present and future.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Review
  17. Article
  18. Reciprocal recurrent genomic selection: an attractive tool to leverage hybrid wheat breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Review
  19. Exploiting the Rht portfolio for hybrid wheat breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

M GowdaState Plant Breeding Institute, University of Hohenheim, Stuttgart, Germany.
Y ZhaoDepartment of Cytogenetics and Genome Analysis, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.
T WürschumState Plant Breeding Institute, University of Hohenheim, Stuttgart, Germany.
C F H LonginState Plant Breeding Institute, University of Hohenheim, Stuttgart, Germany.
T MiedanerState Plant Breeding Institute, University of Hohenheim, Stuttgart, Germany.
E EbmeyerKWS LOCHOW GmBH, Bergen, Germany.
R SchachschneiderNordsaat Saatzuchtgesellschaft mbH, Langenstein, Germany.
E KazmanLantmännen SW Seed Hadmersleben GmbH, Hadmersleben, Germany.
J SchachtLimagrain GmbH, Peine-Rosenthal, Germany.
J-P MartinantLimagrain GmbH, Peine-Rosenthal, Germany.
M F MetteDepartment of Cytogenetics and Genome Analysis, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.
J C ReifDepartment of Cytogenetics and Genome Analysis, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The accuracy of genomic selection depends on the relatedness between the members of the set in which marker effects are estimated based on evaluation data and the types for which performance is predicted. Here, we investigate the impact of relatedness on the performance of marker-assisted selection for fungal disease resistance in hybrid wheat. A large and diverse mapping population of 1739 elite European winter wheat inbred lines and hybrids was evaluated for powdery mildew, leaf rust and stripe rust resistance in multi-location field trials and fingerprinted with 9 k and 90 k SNP arrays. Comparison of the accuracies of prediction achieved with data sets from the two marker arrays revealed a crucial role for a sufficiently high marker density in genome-wide association mapping. Cross-validation studies using test sets with varying degrees of relationship to the corresponding estimation sets revealed that close relatedness leads to a substantial increase in the proportion of total genotypic variance explained by the identified QTL and consequently to an overoptimistic judgment of the precision of marker-assisted selection.

Indexed as

AscomycotaBasidiomycotaChromosome MappingChromosomes, PlantDisease ResistanceGenes, PlantGenetic MarkersGenome-Wide Association StudyGenotypeHost-Pathogen InteractionsHybridization, GeneticInbreedingPhenotypePlant DiseasesPolymorphism, Single NucleotideQuantitative Trait LociGenetic Markers

Identifiers

PMID24346498
PMCPMC3998782

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.