Evidence map›Paper›PMID 24344257›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Rare event of histone demethylation can initiate singular gene expression of olfactory receptors.

Longzhi Tan, Chenghang Zong, X Sunney Xie

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

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  11. Review
  12. Achieving diverse and monoallelic olfactory receptor selection through dual-objective optimization design.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  13. Article
  14. Article
  15. Article
  16. Chemosensory receptor specificity and regulation.Annual review of neuroscience · 2015
    Review
  17. Article
  18. Article
  19. Monoallelic expression of olfactory receptors.Annual review of cell and developmental biology · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Longzhi Tan
Chenghang Zong
X Sunney Xie
Harvard University · US

Funding

Imaging the Invisible with No Labels: A Major Opportunity in Biology and MedicineR01EB010244 · NIBIB · HARVARD UNIVERSITY · PI XIE, XIAOLIANG SUNNEY · 2009 to 2013
$3.9M
NIBIB NIH HHS 5R01EB010244NIBIB NIH HHS R01 EB010244
6 · The paper itself

Abstract

Mammals sense odors through the gene family of olfactory receptors (ORs). Despite the enormous number of OR genes (∼1,400 in mouse), each olfactory sensory neuron expresses one, and only one, of them. In neurobiology, it remains a long-standing mystery how this singularity can be achieved despite intrinsic stochasticity of gene expression. Recent experiments showed an epigenetic mechanism for maintaining singular OR expression: Once any ORs are activated, their expression inhibits further OR activation by down-regulating a histone demethylase Lsd1 (also known as Aof2 or Kdm1a), an enzyme required for the removal of the repressive histone marker H3K9me3 on OR genes. However, it remains unclear at a quantitative level how singularity can be initiated in the first place. In particular, does a simple activation/feedback scheme suffice to generate singularity? Here we show theoretically that rare events of histone demethylation can indeed produce robust singularity by separating two timescales: slow OR activation by stepwise H3K9me3 demethylation, and fast feedback to turn off Lsd1. Given a typical 1-h response of transcriptional feedback, to achieve the observed extent of singularity (only 2% of neurons express more than one ORs), we predict that OR activation must be as slow as 5–10 d-a timescale compatible with experiments. Our model further suggests H3K9me3-to-H3K9me2 demethylation as an additional rate-limiting step responsible for OR singularity. Our conclusions may be generally applicable to other systems where monoallelic expression is desired, and provide guidelines for the design of a synthetic system of singular expression.

Indexed as

Models, NeurologicalAnimalsEpigenesis, GeneticFeedback, PhysiologicalGene Expression RegulationHistone DemethylasesKineticsMiceOlfactory Receptor NeuronsOxidoreductases, N-DemethylatingReceptors, OdorantTime FactorsHistone DemethylasesKDM1a protein, mouseOxidoreductases, N-DemethylatingReceptors, Odorant

Identifiers

PMID24344257
PMCPMC3876194
OpenAlexW1981522019

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.