ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014
Sequence analysis of the genome of carnation (Dianthus caryophyllus L.).
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.
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Who cites it
53 citing papers in PubMed.
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- Genomic basis of scent loss and functional divergence in wild and cultivated carnations (Horticulture research · 2026Article
- DcH3.3 and DcNAC1 Regulate the Expression of UGT73A93 Involved in the Changes in Flower Colour and Fungal Resistance in Carnation.Plant biotechnology journal · 2026Article
- Chromosome-level genome assembly of Youngia japonica reveals evolutionary dynamics underlying adaptation in a synanthropic Asteraceae species.BMC plant biology · 2026Article
- Virus-induced gene silencing inPlant biotechnology (Tokyo, Japan) · 2026Article
- Studies on the mother flower carnation: past, present, and future.Horticulture research · 2025Article
- Evolutionary origin and gradual accumulation with plant evolution of the LACS family.BMC plant biology · 2024Article
- Epigenetics governs senescence.Plant reproduction · 2024Article
- The haplotype-resolved telomere-to-telomere carnation (Horticulture research · 2024Article
- A chromosome-level genome assembly provides insights intoHorticulture research · 2023Article
- How far can omics go in unveiling the mechanisms of floral senescence?Biochemical Society transactions · 2023Article
- Low-Oxygen Responses of Cut Carnation Flowers Associated with Modified Atmosphere Packaging.Plants (Basel, Switzerland) · 2023Article
- Genome-Wide Identification of theInternational journal of molecular sciences · 2023Article
- Histone H3K4 methyltransferase DcATX1 promotes ethylene induced petal senescence in carnation.Plant physiology · 2023Article
- A chromosome-scale and haplotype-resolved genome assembly of carnation (Frontiers in plant science · 2023Article
- Characterization and expression analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Integrated multi-omic data and analyses reveal the pathways underlying key ornamental traits in carnation flowers.Plant biotechnology journal · 2022Article
- Evaluation of Reference Genes in the Polyploid ComplexPlants (Basel, Switzerland) · 2022Article
- The chromosome-level genome ofHorticulture research · 2022Article
- The first draft genome of feather grasses using SMRT sequencing and its implications in molecular studies of Stipa.Scientific reports · 2021Article
Corrections and comments
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Authors and funding
27 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The whole-genome sequence of carnation (Dianthus caryophyllus L.) cv. 'Francesco' was determined using a combination of different new-generation multiplex sequencing platforms. The total length of the non-redundant sequences was 568,887,315 bp, consisting of 45,088 scaffolds, which covered 91% of the 622 Mb carnation genome estimated by k-mer analysis. The N50 values of contigs and scaffolds were 16,644 bp and 60,737 bp, respectively, and the longest scaffold was 1,287,144 bp. The average GC content of the contig sequences was 36%. A total of 1050, 13, 92 and 143 genes for tRNAs, rRNAs, snoRNA and miRNA, respectively, were identified in the assembled genomic sequences. For protein-encoding genes, 43 266 complete and partial gene structures excluding those in transposable elements were deduced. Gene coverage was ∼ 98%, as deduced from the coverage of the core eukaryotic genes. Intensive characterization of the assigned carnation genes and comparison with those of other plant species revealed characteristic features of the carnation genome. The results of this study will serve as a valuable resource for fundamental and applied research of carnation, especially for breeding new carnation varieties. Further information on the genomic sequences is available at http://carnation.kazusa.or.jp.
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