Evidence map›Paper›PMID 24343620›Full record

ArticleThe Pediatric infectious disease journal2014

Rotavirus G and P types circulating in the eastern region of Kenya: predominance of G9 and emergence of G12 genotypes.

Nicholas M Kiulia, Martin M Nyaga, Mapaseka L Seheri, Marianne Wolfaardt, Walda B van Zyl, Mathew D Esona, Grace Irimu, Murithi Inoti, Bernard W Gatinu, Peter K Njenga and 2 more

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In one paragraph

Article in The Pediatric infectious disease journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
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  10. Post-vaccine rotavirus genotype distribution in Nairobi County, Kenya.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
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  16. Evaluation of the Field Performance of ImmunoCard STAT!The American journal of tropical medicine and hygiene · 2017
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  20. Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Nicholas M KiuliaFrom the *Enteric Viruses Research Group, Institute of Primate Research, Karen, Nairobi, Kenya; †Regional Rotavirus Reference Laboratory, MRC/Medunsa Diarrheal Pathogens Research Unit, University of Limpopo; ‡Department of Medical Virology, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa; §Gastroenteritis and Respiratory Viruses Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, GA; ¶Department of Paediatrics, School of Medicine, University of Nairobi, Nairobi; ‖Maua Methodist Hospital, Maua; **Meru General Hospital, Meru; ††Department of Applied Science, Medical Microbiology Program, Jomo Kenyatta University of Agriculture and Technology Karen Campus, Nairobi, Kenya; and ‡‡National Health Laboratory Service, Tshwane Academic Division, Pretoria, South Africa.
Martin M Nyaga
Mapaseka L Seheri
Marianne Wolfaardt
Walda B van Zyl
Mathew D Esona
Grace Irimu
Murithi Inoti
Bernard W Gatinu
Peter K Njenga
Maureen B Taylor
Atunga Nyachieo
Jomo Kenyatta University of Agriculture and Technology · KEInstitute of Primate Research · KEMethodist Hospital · USUniversity of Limpopo · ZA

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

backgroundThe World Health Organization has recommended that rotavirus (RV) vaccines be included in all national immunization programs as part of a strategy to control RV-associated diarrheal diseases. Hospital-based surveillance of RV infection is therefore crucial in monitoring the impact pre- and post-vaccine introduction and also to document changes in genotype distribution. This study sought to determine the RV genotypes circulating in the eastern region of Kenya before introduction of the RV vaccine.

methodsDuring September 2009 to August 2011, 500 stool samples were collected from children <5 years of age admitted for acute diarrhea in hospitals in the eastern region of Kenya and analyzed for the presence of group A RV using an enzyme immunoassay. G and P genotypes were determined using hemi-nested reverse transcriptase polymerase chain reaction.

resultsOne hundred and eighty nine out of 500 (38%) samples analyzed were positive for rotavirus. The following G types were detected: G9 (50.9%), G1 (26.8%), G8 (12.1%), G12 (3.1%), G2 (0.6%), mixed G (1.3%) and 5.1% were G nontypeable. P types detected included: P[8] (63.7%), P[4] (12.1%), P[6] (4.5%), mixed P (7.6%) and 12.1% were P nontypeable. The most dominant strain was G9P[8] (35%), followed by G1P[8] (26.8%), G8P[4] (9.6%), G12P[6] (2.5%), G9P[6] (1.9%), G9P[4] (1.3%), G8P[8] (1.3%), and G2P[4] (0.6%).

conclusionsThe present study demonstrates the recurring changing genotypes of RV circulating in Kenya, with genotypes G9, G1 and G8 being the dominant strains circulating in the eastern region of Kenya between 2009 and 2011. Additionally, G12 genotype was detected for the first time in Kenya.

Indexed as

Child, PreschoolFecesGastroenteritisHumansInfantKenyaPrevalenceProspective StudiesRotavirusRotavirus InfectionsRotavirus VaccinesRotavirus Vaccines

Identifiers

PMID24343620
PMCPMC5813690
OpenAlexW2059242940

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.