Evidence map›Paper›PMID 24343271›Full record

ArticleScientific reports2013

Active and secreted IgA-coated bacterial fractions from the human gut reveal an under-represented microbiota core.

Giuseppe D'Auria, Francesc Peris-Bondia, Mária Džunková, Alex Mira, Maria Carmen Collado, Amparo Latorre, Andrés Moya

Abstract read
In one paragraph

Article in Scientific reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
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  5. Article
  6. Review
  7. Population dynamics ofFrontiers in microbiology · 2022
    Article
  8. Review
  9. Perturbed Microbiota/Immune Homeostasis in Multiple Sclerosis.Neurology(R) neuroimmunology & neuroinflammation · 2021
    Article
  10. Review
  11. Article
  12. Human IgA binds a diverse array of commensal bacteria.The Journal of experimental medicine · 2020
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Giuseppe D'Auria1] Joint Unit of Research in Genomics and Health, Centre for Public Health Research (CSISP) - Cavanilles Institute for Biodiversity and Evolutionary Biology (University of Valencia), Valencia, 46020; Spain [2] CIBER Epidemiología y Salud Pública (CIBERESP); Spain [3].
Francesc Peris-Bondia1] Joint Unit of Research in Genomics and Health, Centre for Public Health Research (CSISP) - Cavanilles Institute for Biodiversity and Evolutionary Biology (University of Valencia), Valencia, 46020; Spain [2] CIBER Epidemiología y Salud Pública (CIBERESP); Spain [3].
Mária Džunková1] Joint Unit of Research in Genomics and Health, Centre for Public Health Research (CSISP) - Cavanilles Institute for Biodiversity and Evolutionary Biology (University of Valencia), Valencia, 46020; Spain [2] CIBER Epidemiología y Salud Pública (CIBERESP); Spain.
Alex MiraJoint Unit of Research in Genomics and Health, Centre for Public Health Research (CSISP) - Cavanilles Institute for Biodiversity and Evolutionary Biology (University of Valencia), Valencia, 46020; Spain.
Maria Carmen ColladoThe Institute of Agrochemistry and Food Technology, Spanish National Research Council (IATA-CSIC), Valencia, 46100; Spain.
Amparo Latorre1] Joint Unit of Research in Genomics and Health, Centre for Public Health Research (CSISP) - Cavanilles Institute for Biodiversity and Evolutionary Biology (University of Valencia), Valencia, 46020; Spain [2] CIBER Epidemiología y Salud Pública (CIBERESP); Spain.
Andrés Moya1] Joint Unit of Research in Genomics and Health, Centre for Public Health Research (CSISP) - Cavanilles Institute for Biodiversity and Evolutionary Biology (University of Valencia), Valencia, 46020; Spain [2] CIBER Epidemiología y Salud Pública (CIBERESP); Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Host-associated microbiota varies in distribution depending on the body area inhabited. Gut microbes are known to interact with the human immune system, maintaining gut homoeostasis. Thus, we studied whether secreted-IgA (S-IgA) coat specific microbial taxa without inducing strong immune responses. To do so, we fractionated gut microbiota by flow cytometry. We found that active and S-IgA-coated bacterial fractions were characterized by a higher diversity than those observed in raw faecal suspensions. A long-tail effect was observed in family distribution, revealing that rare bacteria represent up to 20% of total diversity. While Firmicutes was the most abundant phylum, the majority of its sequences were not assigned at the genus level. Finally, the single-cell-based approach enabled us to focus on active and S-IgA-coated bacteria. Thus, we revealed a microbiota core common to the healthy volunteers participating in the study. Interestingly, this core was composed mainly of low frequency taxa (e.g. Sphingomonadaceae).

Indexed as

MicrobiotaAdultBacteriaBiodiversityComputational BiologyDNA Barcoding, TaxonomicFemaleGastrointestinal TractHumansImmunoglobulin AMaleMetagenomeSequence Analysis, DNAYoung AdultImmunoglobulin A

Identifiers

PMID24343271
PMCPMC3865468

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.