ArticleBMC genomics2013
Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors.
Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
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Who cites it
22 citing papers in PubMed.
- Comparative Genomics Reveals Host-Specific Adaptation ofJournal of fungi (Basel, Switzerland) · 2026Article
- Research Progress on Rice-Blast-Resistance-Related Genes.Plants (Basel, Switzerland) · 2025Review
- A fungal core effector exploits the OsPUX8B.2-OsCDC48-6 module to suppress plant immunity.Nature communications · 2024Article
- The SWC4 subunit of the SWR1 chromatin remodeling complex is involved in varying virulence ofVirulence · 2022Article
- Advancement in the Breeding, Biotechnological and Genomic Tools towards Development of Durable Genetic Resistance against the Rice Blast Disease.Plants (Basel, Switzerland) · 2022Review
- Understanding the Dynamics of Blast Resistance in Rice-Journal of fungi (Basel, Switzerland) · 2022Review
- Gene deletion and constitutive expression of the pectate lyase gene 1 (MoPL1) lead to diminished virulence of Magnaporthe oryzae.Journal of microbiology (Seoul, Korea) · 2022Article
- Comparative Genomics and Gene Pool Analysis Reveal the Decrease of Genome Diversity and Gene Number in Rice Blast Fungi by Stable Adaption with Rice.Journal of fungi (Basel, Switzerland) · 2021Article
- Accessory Chromosomes inPhytopathology · 2020Review
- Genetic Variation Bias toward Noncoding Regions and Secreted Proteins in the Rice Blast Fungus Magnaporthe oryzae.mSystems · 2020Article
- Evolution of the Genes Encoding Effector Candidates Within Multiple Pathotypes ofFrontiers in microbiology · 2019Article
- Comparative Genomics Reveals the High Copy Number Variation of a Retro Transposon in DifferentFrontiers in microbiology · 2019Article
- Article
- Population genomic analysis of the rice blast fungus reveals specific events associated with expansion of three main clades.The ISME journal · 2018Article
- Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3.Scientific reports · 2018Article
- Defence responses in rice plants in prior and simultaneous applications of Cladosporium sp. during leaf blast suppression.Environmental science and pollution research international · 2016Article
- The Magnaporthe grisea species complex and plant pathogenesis.Molecular plant pathology · 2016Review
- Directional Selection from Host Plants Is a Major Force Driving Host Specificity in Magnaporthe Species.Scientific reports · 2016Article
- Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici.G3 (Bethesda, Md.) · 2016Article
- Discovery of the molecular mechanisms of the novel chalcone-basedSpringerPlus · 2016Article
Corrections and comments
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Authors and funding
13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRice blast caused by the fungus Magnaporthe oryzae is an important disease in virtually every rice growing region of the world, which leads to significant annual decreases of grain quality and yield. To prevent disease, resistance genes in rice have been cloned and introduced into susceptible cultivars. However, introduced resistance can often be broken within few years of release, often due to mutation of cognate avirulence genes in fungal field populations.
resultsTo better understand the pattern of mutation of M. oryzae field isolates under natural selection forces, we used a next generation sequencing approach to analyze the genomes of two field isolates FJ81278 and HN19311, as well as the transcriptome of FJ81278. By comparing the de novo genome assemblies of the two isolates against the finished reference strain 70-15, we identified extensive polymorphisms including unique genes, SNPs (single nucleotide polymorphism) and indels, structural variations, copy number variations, and loci under strong positive selection. The 1.75 MB of isolate-specific genome content carrying 118 novel genes from FJ81278, and 0.83 MB from HN19311 were also identified. By analyzing secreted proteins carrying polymorphisms, in total 256 candidate virulence effectors were found and 6 were chosen for functional characterization.
conclusionsWe provide results from genome comparison analysis showing extensive genome variation, and generated a list of M. oryzae candidate virulence effectors for functional characterization.
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