Evidence map›Paper›PMID 24340004›Full record

Trial reportPloS one2013

Helicobacter pylori genomic microevolution during naturally occurring transmission between adults.

Bodo Linz, Helen M Windsor, John P Gajewski, Caylie M Hake, Daniela I Drautz, Stephan C Schuster, Barry J Marshall

Abstract readClinical Trial
In one paragraph

Trial report in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
    Review
  6. Whole-Genome Sequencing and Comparative Genomics of ThreePathogens (Basel, Switzerland) · 2021
    Article
  7. mBio · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. PeerJ · 2018
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bodo LinzDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, United States of America ; Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania, United States of America.
Helen M Windsor
John P Gajewski
Caylie M Hake
Daniela I Drautz
Stephan C Schuster
Barry J Marshall

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human gastric pathogen Helicobacter pylori is usually acquired during childhood and, in the absence of treatment, chronic infection persists through most of the host's life. However, the frequency and importance of H. pylori transmission between adults is underestimated. Here we sequenced the complete genomes of H. pylori strains that were transmitted between spouses and analysed the genomic changes. Similar to H. pylori from chronic infection, a significantly high proportion of the determined 31 SNPs and 10 recombinant DNA fragments affected genes of the hop family of outer membrane proteins, some of which are known to be adhesins. In addition, changes in a fucosyltransferase gene modified the LPS component of the bacterial cell surface, suggesting strong diversifying selection. In contrast, virulence factor genes were not affected by the genomic changes. We propose a model of the genomic changes that are associated with the transmission and adaptation of H. pylori to a new human host.

Indexed as

Evolution, MolecularPolymorphism, Single NucleotideAdaptation, PhysiologicalAdultBase SequenceDNA, BacterialFemaleHelicobacter InfectionsHelicobacter pyloriHumansMaleMolecular Sequence DataDNA, Bacterial

Identifiers

PMID24340004
PMCPMC3858298

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.