Evidence map›Paper›PMID 24339354›Full record

ArticleChembiochem : a European journal of chemical biology2014

A differential fluorescent receptor for nucleic acid analysis.

Hillary N Bengtson, Dmitry M Kolpashchikov

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity.Chembiochem : a European journal of chemical biology · 2016
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Hillary N BengtsonChemistry Department and Burnett School of Biomedical Sciences, University of Central Florida, 4000 Central Florida Blvd, Orlando, FL 32816 (USA).
Dmitry M Kolpashchikov

Funding

Nucleic acid analysis using deoxyribozyme technologyR21HG004060 · NHGRI · UNIVERSITY OF CENTRAL FLORIDA · PI KOLPASHCHIKOV, DMITRY MIKHAYLOVICH · 2006 to 2010
$592k
Deoxyribozyme sensor-based diagnostics for Mycobacterium tuberculosisR15AI103880 · NIAID · UNIVERSITY OF CENTRAL FLORIDA · PI KOLPASHCHIKOV, DMITRY MIKHAYLOVICH · 2013 to 2013
$430k
A Binary Probe-Based DNAzyme Cascade for Rapid Detection of MRSA/MSSAR41AI100468 · NIAID · BIODETECTION INSTRUMENTS, INC. · PI KOLPASHCHIKOV, DMITRY MIKHAYLOVICH, SU, XIAOLI · 2012 to 2012
$169k
NHGRI NIH HHS R21 HG004060NIAID NIH HHS R15 AI103880NIAID NIH HHS R15AI10388001A1NIAID NIH HHS R41 AI100468
6 · The paper itself

Abstract

Differential receptors use an array of sensors to recognize analytes. Each sensor in the array can recognize not one, but several analytes with different rates, so a single analyte triggers a response of several sensors in the array. The receptor thus produces a pattern of signals that is unique for each analyte, thereby enabling identification of a specific analyte by producing a "fingerprint" pattern. We applied this approach for the analysis of DNA sequences of Mycobacterium tuberculosis strains that differ by single nucleotide substitutions in the 81-bp hot-spot region that imparts rifampin resistance. The technology takes advantage of the new multicomponent, selfassembling sensor, which produces a fluorescent signal in the presence of specific DNA sequences. A differential fluorescent receptor (DFR) contained an array of three such sensors and differentiated at least eight DNA sequences. The approach requires only one molecular-beacon-like fluorescent reporter, which can be used by all three sensors. The DFR developed in this study represents a cost-efficient alternative to molecular diagnostic technologies that use fluorescent hybridization probes.

Indexed as

Base SequenceDNA, BacterialMycobacterium tuberculosisNucleic Acid HybridizationOligonucleotide ProbesSpectrometry, FluorescenceDNA, BacterialOligonucleotide Probesdifferential receptorsdumbbell molecular beaconprincipal component analysisSNP analysis

Identifiers

PMID24339354
PMCPMC4066444

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.