Evidence map›Paper›PMID 24338483›Full record

ArticleThe Journal of biological chemistry2014

Activation of protein kinase PKR requires dimerization-induced cis-phosphorylation within the activation loop.

Madhusudan Dey, Brian Rick Mann, Ashish Anshu, M Amin-ul Mannan

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Activation of PKR by a short-hairpin RNA.bioRxiv : the preprint server for biology · 2024
    Article
  12. ADAR Family Proteins: A Structural Review.Current issues in molecular biology · 2024
    Review
  13. RNA recognition by PKR during DNA virus infection.Journal of medical virology · 2024
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Cellular origins of dsRNA, their recognition and consequences.Nature reviews. Molecular cell biology · 2022
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Madhusudan DeyFrom the Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin 53211.
Brian Rick Mann
Ashish Anshu
M Amin-ul Mannan
University of Wisconsin–Milwaukee · US

Funding

Molecular Insights into Activation and Substrate Recognition of Protein Kinase RR15GM101575 · NIGMS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI DEY, MADHUSUDAN · 2012 to 2012
$335k
NIGMS NIH HHS 1R15GM101575NIGMS NIH HHS R15 GM101575
6 · The paper itself

Abstract

Protein kinase R (PKR) functions in a plethora of cellular processes, including viral and cellular stress responses, by phosphorylating the translation initiation factor eIF2α. The minimum requirements for PKR function are homodimerization of its kinase and RNA-binding domains, and autophosphorylation at the residue Thr-446 in a flexible loop called the activation loop. We investigated the interdependence between dimerization and Thr-446 autophosphorylation using the yeast Saccharomyces cerevisiae model system. We showed that an engineered PKR that bypassed the need for Thr-446 autophosphorylation (PKR(T446∼P)-bypass mutant) could function without a key residue (Asp-266 or Tyr-323) that is essential for PKR dimerization, suggesting that dimerization precedes and stimulates activation loop autophosphorylation. We also showed that the PKR(T446∼P)-bypass mutant was able to phosphorylate eIF2α even without its RNA-binding domains. These two significant findings reveal that PKR dimerization and activation loop autophosphorylation are mutually exclusive yet interdependent processes. Also, we provide evidence that Thr-446 autophosphorylation during PKR activation occurs in a cis mechanism following dimerization.

Indexed as

Amino Acid SubstitutioneIF-2 KinaseEukaryotic Initiation Factor-2Mutation, MissensePhosphorylationProtein MultimerizationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinseIF-2 KinaseEukaryotic Initiation Factor-2Saccharomyces cerevisiae ProteinsActivation LoopeIF2αPhosphorylationProtein Kinase RNA (PKR)Protein KinasesProtein PhosphorylationStress Response

Identifiers

PMID24338483
PMCPMC3937647
OpenAlexW2017795269

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.