Evidence map›Paper›PMID 24337568›Full record

ArticleThe Journal of biological chemistry2014

Organization of the mitochondrial apoptotic BAK pore: oligomerization of the BAK homodimers.

Sreevidya Aluvila, Tirtha Mandal, Eric Hustedt, Peter Fajer, Jun Yong Choe, Kyoung Joon Oh

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
11.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  8. Review
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  13. BAK core dimers bind lipids and can be bridged by them.Nature structural & molecular biology · 2020
    Article
  14. BAX, BAK, and BOK: A Coming of Age for the BCL-2 Family Effector Proteins.Cold Spring Harbor perspectives in biology · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. The contribution of modern EPR to structural biology.Emerging topics in life sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Sreevidya AluvilaFrom the Department of Biochemistry and Molecular Biology, The Chicago Medical School, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois 60064.
Tirtha Mandal
Eric Hustedt
Peter Fajer
Jun Yong Choe
Kyoung Joon Oh
Rosalind Franklin University of Medicine and Science · USFlorida State University · USVanderbilt University · US

Funding

BAX/BAK-Mediated Mitochondrial Outer Membrane Permeabilization in ApoptosisR01GM097508 · NIGMS · ROSALIND FRANKLIN UNIV OF MEDICINE & SCI · PI OH, KYOUNG JOON · 2012 to 2016
$1.5M
NIGMS NIH HHS 5 R01 GM097508NIGMS NIH HHS R01 GM097508
6 · The paper itself

Abstract

The multidomain pro-apoptotic Bcl-2 family proteins BAK and BAX are believed to form large oligomeric pores in the mitochondrial outer membrane during apoptosis. Formation of these pores results in the release of apoptotic factors including cytochrome c from the intermembrane space into the cytoplasm, where they initiate the cascade of events that lead to cell death. Using the site-directed spin labeling method of electron paramagnetic resonance (EPR) spectroscopy, we have determined the conformational changes that occur in BAK when the protein targets to the membrane and forms pores. The data showed that helices α1 and α6 disengage from the rest of the domain, leaving helices α2-α5 as a folded unit. Helices α2-α5 were shown to form a dimeric structure, which is structurally homologous to the recently reported BAX "BH3-in-groove homodimer." Furthermore, the EPR data and a chemical cross-linking study demonstrated the existence of a hitherto unknown interface between BAK BH3-in-groove homodimers in the oligomeric BAK. This novel interface involves the C termini of α3 and α5 helices. The results provide further insights into the organization of the BAK oligomeric pores by the BAK homodimers during mitochondrial apoptosis, enabling the proposal of a BAK-induced lipidic pore with the topography of a "worm hole."

Indexed as

Amino Acid SequenceAnimalsApoptosisbcl-2-Associated X Proteinbcl-2 Homologous Antagonist-Killer ProteinDimerizationElectron Spin Resonance SpectroscopyLiposomesMiceMitochondriaMitochondrial MembranesModels, ChemicalMolecular Sequence DataMutagenesis, Site-DirectedPermeabilityProtein FoldingBak1 protein, mouseBax protein, mousebcl-2-Associated X Proteinbcl-2 Homologous Antagonist-Killer ProteinLiposomesApoptosisBakBaxBcl-2Cell DeathElectron Paramagnetic Resonance (EPR)MitochondriaOligomerization InterfaceSpin Labeling

Identifiers

PMID24337568
PMCPMC3908389
OpenAlexW2010572903

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.