ArticleBioinformatics (Oxford, England)2014
forqs: forward-in-time simulation of recombination, quantitative traits and selection.
Article in Bioinformatics (Oxford, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed.
- Parameter Scaling in Population Genetics Simulations may Introduce Unintended Background Selection: Considerations for Scaled Simulation Design.Genome biology and evolution · 2025Article
- Modeling Recombination Rate as a Quantitative Trait Reveals New Insight into Selection in Humans.Genome biology and evolution · 2023Article
- Blib is a multi-module simulation platform for genetics studies and intelligent breeding.Communications biology · 2022Article
- AdmixSim 2: a forward-time simulator for modeling complex population admixture.BMC bioinformatics · 2021Article
- Demographic history shapes genomic ancestry in hybrid zones.Ecology and evolution · 2021Article
- CoreSimul: a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination.BMC bioinformatics · 2020Article
- Accurate Allele Frequencies from Ultra-low Coverage Pool-Seq Samples in Evolve-and-Resequence Experiments.G3 (Bethesda, Md.) · 2019Article
- Crossword: A data-driven simulation language for the design of genetic-mapping experiments and breeding strategies.Scientific reports · 2019Article
- pSBVB: A Versatile Simulation Tool To Evaluate Genomic Selection in Polyploid Species.G3 (Bethesda, Md.) · 2019Article
- Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.Nature ecology & evolution · 2018Article
- MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies.PLoS computational biology · 2018Article
- Article
- Nucleotide diversity inflation as a genome-wide response to experimental lifespan extension in Drosophila melanogaster.BMC genomics · 2017Article
- Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system.BMC genomics · 2016Article
- Clotho: addressing the scalability of forward time population genetic simulation.BMC bioinformatics · 2015Article
- XSim: Simulation of Descendants from Ancestors with Sequence Data.G3 (Bethesda, Md.) · 2015Article
- Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation.Heredity · 2015Review
- Power analysis of artificial selection experiments using efficient whole genome simulation of quantitative traits.Genetics · 2015Article
- A C++ template library for efficient forward-time population genetic simulation of large populations.Genetics · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
summaryforqs is a forward-in-time simulation of recombination, quantitative traits and selection. It was designed to investigate haplotype patterns resulting from scenarios where substantial evolutionary change has taken place in a small number of generations due to recombination and/or selection on polygenic quantitative traits. AVAILABILITY AND IMPLEMENTATION: forqs is implemented as a command-line C++ program. Source code and binary executables for Linux, OSX and Windows are freely available under a permissive BSD license: https://bitbucket.org/dkessner/forqs.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.