Evidence map›Paper›PMID 24336069›Full record

ArticleLaboratory investigation; a journal of technical methods and pathology2014

Differentially expressed genes in autosomal dominant osteopetrosis type II osteoclasts reveal known and novel pathways for osteoclast biology.

Amélie E Coudert, Andrea Del Fattore, Céline Baulard, Robert Olaso, Corinne Schiltz, Corinne Collet, Anna Teti, Marie-Christine de Vernejoul

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Laboratory investigation; a journal of technical methods and pathology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

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  12. A Novel Variant inFrontiers in cell and developmental biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Amélie E CoudertInstitut National de la Santé et de la Recherche Médicale U606, Hôpital Lariboisière, Paris, France.
Andrea Del FattoreRegenerative Medicine Unit, Ospedale Pediatrico Bambino Gesù, Rome, Italy.
Céline BaulardCEA-Institut de Génomique, Centre National de Genotypage, Evry, France.
Robert OlasoCEA-Institut de Génomique, Centre National de Genotypage, Evry, France.
Corinne SchiltzInstitut National de la Santé et de la Recherche Médicale U606, Hôpital Lariboisière, Paris, France.
Corinne Collet1] Institut National de la Santé et de la Recherche Médicale U606, Hôpital Lariboisière, Paris, France [2] Service de Biochimie, Hôpital Lariboisière, Paris, France.
Anna TetiDepartment of Biotechnological and Applied Clinical Sciences, Università degli studi dell'Aquila, L'Aquila, Italy.
Marie-Christine de Vernejoul1] Institut National de la Santé et de la Recherche Médicale U606, Hôpital Lariboisière, Paris, France [2] INSERM U606, Os et articulations, Bâtiment Viggo Petersen, Secteur Viole, Fédération de Rhumatologie, Hôpital Lariboisière, Paris, France.
Genoscope · FRHôpital Lariboisière · FRInserm · FRBambino Gesù Children's Hospital · ITUniversity of L'Aquila · IT

Funding

Telethon GGP09018
6 · The paper itself

Abstract

Autosomal dominant osteopetrosis type II (ADO II) is a rare, heritable bone disorder characterized by a high bone mass and insufficient osteoclast activity. Mutations in the CLCN7 gene have been reported to cause ADO II. To gain novel insights into the pathways dysregulated in ADOII osteoclasts, we identified changes in gene expression in osteoclasts from patients with a heterozygous mutation of CLCN7. To do this, we carried out a transcriptomic study comparing gene expression in the osteoclasts of patients with ADO II and healthy donors. Our data show that, according to our selection criteria, 182 genes were differentially expressed in osteoclasts from patients and controls. From the 18 displaying the highest change in microarray, we confirmed differential expression for seven by qPCR. Although two of them have previously been found to be expressed in osteoclasts (ITGB5 and SERPINE2), the other five (CES1 (carboxyl esterase 1), UCHL1 (ubiquitin carboxy-terminal esterase L1, also known as ubiquitin thiolesterase), WARS (tryptophanyl-tRNA synthetase), GBP4 (guanylate-binding protein 4), and PRF1) are not yet known to have a role in this cell type. At the protein level, we confirmed elevated expression of ITGB5 and reduced expression of WARS, PRF1, and SERPINE2. Transfection of ClC-7 harboring the G215R mutation into osteoclasts resulted in an increased ITGB5 and reduced PRF1 expression of borderline significance. Finally, we observed that the ADO II patients presented a normal or increased serum level of bone formation markers, demonstrating a coupling between dysfunctional osteoclasts and osteoblasts. Sphingosine kinase 1 mRNA was expressed at the same level in ADO II and control osteoclasts. In conclusion, these data suggest that in addition to an acidification dysfunction caused by the CLCN7 mutation, a change in ITGB5, PRF1, WARS, and SERPINE2 expression could be part of the osteoclastic phenotype of ADO II.

Indexed as

AdultAgedAged, 80 and overCarboxylic Ester HydrolasesCase-Control StudiesChloride ChannelsFemaleGTP-Binding ProteinsHumansIntegrin beta ChainsMaleMiddle AgedMutant ProteinsMutationMutation, MissenseOsteoclastsCarboxylic Ester HydrolasesCES1 protein, humanChloride ChannelsCLCN7 protein, humanGTP-Binding Proteinsintegrin beta5Integrin beta ChainsMutant ProteinsPerforinPore Forming Cytotoxic ProteinsPRF1 protein, humanRNA, MessengerSerpin E2SERPINE2 protein, humanTryptophan-tRNA LigaseUbiquitin ThiolesteraseUCHL1 protein, humanWARS1 protein, human

Identifiers

PMID24336069
OpenAlexW1972524164

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.