Evidence map›Paper›PMID 24333658›Full record

ArticleGene expression patterns : GEP2014

Expression of LIM-homeodomain transcription factors in the developing and mature mouse retina.

Revathi Balasubramanian, Andrew Bui, Qian Ding, Lin Gan

Open access · greenAbstract read
In one paragraph

Article in Gene expression patterns : GEP, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 50 citations in OpenAlex.

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  5. Inducible CreERbioRxiv : the preprint server for biology · 2025
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  13. Genetic control of retinal ganglion cell genesis.Cellular and molecular life sciences : CMLS · 2021
    Review
  14. Biology open · 2021
    Article
  15. Article
  16. Article
  17. Generation and characterization of Lhx4Genesis (New York, N.Y. : 2000) · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Revathi BalasubramanianFlaum Eye Institute and Department of Ophthalmology, University of Rochester Medical Center, Rochester, NY 14642, USA; Department of Neurobiology and Anatomy, University of Rochester Medical Center, Rochester, NY 14642, USA.
Andrew BuiDepartment of Biology, University of Rochester Medical Center, Rochester, NY 14642, USA.
Qian DingFlaum Eye Institute and Department of Ophthalmology, University of Rochester Medical Center, Rochester, NY 14642, USA.
Lin GanFlaum Eye Institute and Department of Ophthalmology, University of Rochester Medical Center, Rochester, NY 14642, USA; Department of Neurobiology and Anatomy, University of Rochester Medical Center, Rochester, NY 14642, USA. Electronic address: lin_gan@urmc.rochester.edu.
University of Rochester Medical Center · US

Funding

The role of BARHL2 in the mosaic pattering and dendritic tiling of retinal amacriR21EY023104 · NEI · UNIVERSITY OF ROCHESTER · PI GAN, LIN · 2013 to 2014
$418k
NEI NIH HHS 1R21EY023104NEI NIH HHS R21 EY023104
6 · The paper itself

Abstract

LIM-homeodomain (LIM-HD) transcription factors have been extensively studied for their role in the development of the central nervous system. Their function is key to several developmental events like cell proliferation, differentiation and subtype specification. However, their roles in retinal neurogenesis remain largely unknown. Here we report a detailed expression study of LIM-HD transcription factors LHX9 and LHX2, LHX3 and LHX4, and LHX6 in the developing and mature mouse retina using immunohistochemistry and in situ hybridization techniques. We show that LHX9 is expressed during the early stages of development in the retinal ganglion cell layer and the inner nuclear layer. We also show that LHX9 is expressed in a subset of amacrine cells in the adult retina. LHX2 is known to be expressed in retinal progenitor cells during development and in Müller glial cells and a subset of amacrine cells in the adult retina. We found that the LHX2 subset of amacrine cells is not cholinergic and that a very few of LHX2 amacrine cells express calretinin. LHX3 and LHX4 are expressed in a subset of bipolar cells in the adult retina. LHX6 is expressed in cells in the ganglion cell layer and the neuroblast layer starting at embryonic stage 13.5 (E13.5) and continues to be expressed in cells in the ganglion cell layer and inner nuclear layer, postnatally, suggesting its likely expression in amacrine cells or a subset thereof. Taken together, our comprehensive assay of expression patterns of LIM-HD transcription factors during mouse retinal development will help further studies elucidating their biological functions in the differentiation of retinal cell subtypes.

Indexed as

Amacrine CellsAnimalsAnimals, NewbornCalbindin 2Embryo, MammalianGene Expression Regulation, DevelopmentalLIM-Homeodomain ProteinsMiceMice, Inbred C57BLNerve Tissue ProteinsRetinaRetinal Ganglion CellsRetinal Photoreceptor Cell Inner SegmentTranscription FactorsCalb2 protein, mouseCalbindin 2Lhx2 protein, mouseLhx3 proteinLhx4 protein, mouseLHX6 protein, mouseLhx9 protein, mouseLIM-Homeodomain ProteinsNerve Tissue ProteinsTranscription FactorsLhx genesLIM-homeodomainRetinal developmentRetinogenesisTranscription factors

Identifiers

PMID24333658
PMCPMC3921069
OpenAlexW2079897953

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.