Evidence map›Paper›PMID 24333048›Full record

ArticlePlacenta2014

A comprehensive analysis of the human placenta transcriptome.

J Saben, Y Zhong, S McKelvey, N K Dajani, A Andres, T M Badger, H Gomez-Acevedo, K Shankar

Open access · greenAbstract read
In one paragraph

Article in Placenta, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 2 pooled it
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 2 syntheses or guidelines pooled it, 69 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Thyroid Hormone Transporters in Pregnancy and Fetal Development.International journal of molecular sciences · 2022
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Overexpression of ERAP2N in Human Trophoblast Cells Promotes Cell Death.International journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

J SabenArkansas Children's Nutrition Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA; Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Y ZhongArkansas Children's Nutrition Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
S McKelveyDepartment of Obstetrics and Gynecology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
N K DajaniDepartment of Obstetrics and Gynecology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
A AndresArkansas Children's Nutrition Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA; Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
T M BadgerArkansas Children's Nutrition Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA; Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
H Gomez-AcevedoArkansas Children's Nutrition Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA; Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
K ShankarArkansas Children's Nutrition Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA; Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA. Electronic address: ShankarKartik@uams.edu.
University of Arkansas for Medical Sciences · USArkansas Children's Nutrition Center · US

Funding

Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
Maternal Overweight: Consequences for Insulin Signaling in the OffspringR01DK084225 · NIDDK · ARKANSAS CHILDREN'S HOSPITAL RES INST · PI SHANKAR, KARTIK · 2009 to 2013
$1.6M
Arkansas Center for Clinical Translational ResearchKL2TR000063 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$459k
NCATS NIH HHS KL2 TR000063NCATS NIH HHS KL2TR000063NCATS NIH HHS UL1 TR000039NCATS NIH HHS UL1TR000039NIDDK NIH HHS R01 DK084225NIDDK NIH HHS R01-DK084225
6 · The paper itself

Abstract

As the conduit for nutrients and growth signals, the placenta is critical to establishing an environment sufficient for fetal growth and development. To better understand the mechanisms regulating placental development and gene expression, we characterized the transcriptome of term placenta from 20 healthy women with uncomplicated pregnancies using RNA-seq. To identify genes that were highly expressed and unique to the placenta we compared placental RNA-seq data to data from 7 other tissues (adipose, breast, hear, kidney, liver, lung, and smooth muscle) and identified several genes novel to placental biology (QSOX1, DLG5, and SEMA7A). Semi-quantitative RT-PCR confirmed the RNA-seq results and immunohistochemistry indicated these proteins were highly expressed in the placental syncytium. Additionally, we mined our RNA-seq data to map the relative expression of key developmental gene families (Fox, Sox, Gata, Tead, and Wnt) within the placenta. We identified FOXO4, GATA3, and WNT7A to be amongst the highest expressed members of these families. Overall, these findings provide a new reference for understanding of placental transcriptome and can aid in the identification of novel pathways regulating placenta physiology that may be dysregulated in placental disease.

Indexed as

TranscriptomeAntigens, CDBase SequenceCell Cycle ProteinsFemaleForkhead Transcription FactorsGATA3 Transcription FactorGene Expression ProfilingGPI-Linked ProteinsHumansMembrane ProteinsOxidoreductases Acting on Sulfur Group DonorsPlacentaPregnancySemaphorinsTissue DistributionAntigens, CDCell Cycle ProteinsDLG5 protein, humanForkhead Transcription FactorsFOXO4 protein, humanGATA3 protein, humanGATA3 Transcription FactorGPI-Linked ProteinsMembrane ProteinsOxidoreductases Acting on Sulfur Group DonorsQSOX1 protein, humanSEMA7A protein, humanSemaphorinsTranscription FactorsTumor Suppressor ProteinsWNT7A protein, humanWnt ProteinsDevelopmentFetal tissueGene expressionPregnancyRNA-seq

Identifiers

PMID24333048
PMCPMC3978120
OpenAlexW2012664779

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.