Evidence map›Paper›PMID 24332390›Full record

ArticleBiomaterials2014

Molecular mechanisms underlying the enhanced functions of three-dimensional hepatocyte aggregates.

Tammy T Chang, Millie Hughes-Fulford

Open access · greenAbstract read
In one paragraph

Article in Biomaterials, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 54 citations in OpenAlex.

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  11. Characterization of primary mouse hepatocyte spheroids as a model system to support investigations of drug-induced liver injury.Toxicology in vitro : an international journal published in association with BIBRA · 2021
    Article
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  19. Direct orthotopic implantation of hepatic organoids.The Journal of surgical research · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Tammy T ChangDepartment of Surgery, University of California, San Francisco, CA 94143, USA; Liver Center, University of California, San Francisco, CA 94143, USA. Electronic address: tammy.chang@ucsf.edu.
Millie Hughes-FulfordDepartment of Medicine, University of California, San Francisco, CA 94143, USA; Northern California Institute for Research and Education, San Francisco, CA 94121, USA.
University of California, San Francisco · US

Funding

UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
Suppression of the Immune Response in Spaceflight and AgingUH3AG037628 · NIA · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI HUGHES-FULFORD, MILLIE · 2012 to 2014
$2.3M
Liver Tissue Engineering Through Three-Dimensional Hepatocyte CultureK08DK093708 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHANG, TAMMY T · 2012 to 2016
$760k
NIA NIH HHS UH3 AG037628NIA NIH HHS UH3-AG037628NIDDK NIH HHS K08 DK093708NIDDK NIH HHS K08-DK093708NIDDK NIH HHS P30 DK026743NIDDK NIH HHS P30-DK026743
6 · The paper itself

Abstract

Three-dimensional (3D) culture of hepatocytes leads to improved and prolonged synthetic and metabolic functions, but the underlying molecular mechanisms are unknown. In order to investigate the role of 3D cell-cell interactions in maintaining hepatocyte differentiated functions ex vivo, primary mouse hepatocytes were cultured either as monolayers on tissue culture dishes (TCD) or as 3D aggregates in rotating wall vessel (RWV) bioreactors. Global gene expression analyses revealed that genes upregulated in 3D culture were distinct from those upregulated during liver development and liver regeneration. Instead, they represented a diverse array of hepatocyte-specific functional genes with significant over-representation of hepatocyte nuclear factor 4α (Hnf4a) binding sites in their promoters. Expression of Hnf4a and many of its downstream target genes were significantly increased in RWV cultures as compared to TCD. Conversely, there was concomitant suppression of mesenchymal and cytoskeletal genes in RWV cultures that were induced in TCDs. These findings illustrate the importance of 3D cell-cell interactions in maintaining fundamental molecular pathways of hepatocyte function and serve as a basis for rational design of biomaterials that aim to optimize hepatocyte functions ex vivo for biomedical applications.

Indexed as

AnimalsBase SequenceDNA PrimersGene Expression ProfilingHepatocytesMiceReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionDNA PrimersBioreactorGene expressionHepatocyteMicroarraySpheroidThree-dimensional cell culture

Identifiers

PMID24332390
PMCPMC4012541
OpenAlexW2128846046

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.