Evidence map›Paper›PMID 24332044›Full record

ArticleCancer cell2013

Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma.

Bjoern Chapuy, Michael R McKeown, Charles Y Lin, Stefano Monti, Margaretha G M Roemer, Jun Qi, Peter B Rahl, Heather H Sun, Kelly T Yeda, John G Doench and 6 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Cancer cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 506 papers.

0numbers the graph read from it
0cells of the map it votes in
506citing papers in PubMed
25.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

506 citing papers in PubMed, 757 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Super-enhancer profiling reveals ThPOK/ZBTB7B, a CD4Cellular and molecular life sciences : CMLS · 2025
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. PTAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  20. Article

446 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Bjoern ChapuyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Michael R McKeownDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Charles Y LinDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Stefano MontiSection of Computational Biomedicine, Boston University School of Medicine, Boston, MA 02118, USA.
Margaretha G M RoemerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Jun QiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Peter B RahlWhitehead Institute of Genome Research, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Heather H SunDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Kelly T YedaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
John G DoenchBroad Institute, Cambridge, MA 02142, USA.
Elaine ReichertDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Andrew L KungDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Scott J RodigDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Richard A YoungWhitehead Institute of Genome Research, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Margaret A ShippDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA. Electronic address: margaret_shipp@dfci.harvard.edu.
James E BradnerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA. Electronic address: james_bradner@dfci.harvard.edu.
Dana-Farber Cancer Institute · USBrigham and Women's Hospital · USBoston University · USBroad Institute · USMassachusetts Institute of Technology · USWhitehead Institute for Biomedical Research · US

Funding

Trageting the Multiple Myeloma EpigenomeP50CA100707 · NCI · DANA-FARBER CANCER INSTITUTE · PI ANDERSON, KENNETH C., MUNSHI, NIKHIL C. · 2003 to 2023
$45.0M
U Mass Boston / DFHCC U54 Partnership (1 of 2)U54CA156732 · NCI · DANA-FARBER CANCER INST · PI WENDY Beth LONDON · 2010 to 2026
$25.6M
Targeting to Epigenetic Modications in ALLR01CA176745 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ARMSTRONG, SCOTT A, QI, JUN · 2012 to 2022
$4.2M
Multiple Myeloma and Cancer Therapies via Largazole AnalogsR01CA152314 · NCI · COLORADO STATE UNIVERSITY · PI WILLIAMS, ROBERT MICHAEL · 2010 to 2014
$1.5M
NCI NIH HHS P50 CA100707NCI NIH HHS R01 CA152314NCI NIH HHS R01 CA176745NCI NIH HHS U54 CA156732
6 · The paper itself

Abstract

Diffuse large B cell lymphoma (DLBCL) is a biologically heterogeneous and clinically aggressive disease. Here, we explore the role of bromodomain and extra-terminal domain (BET) proteins in DLBCL, using integrative chemical genetics and functional epigenomics. We observe highly asymmetric loading of bromodomain 4 (BRD4) at enhancers, with approximately 33% of all BRD4 localizing to enhancers at 1.6% of occupied genes. These super-enhancers prove particularly sensitive to bromodomain inhibition, explaining the selective effect of BET inhibitors on oncogenic and lineage-specific transcriptional circuits. Functional study of genes marked by super-enhancers identifies DLBCLs dependent on OCA-B and suggests a strategy for discovering unrecognized cancer dependencies. Translational studies performed on a comprehensive panel of DLBCLs establish a therapeutic rationale for evaluating BET inhibitors in this disease.

Indexed as

Enhancer Elements, GeneticAzepinesBromodomain Containing ProteinsCell Cycle ProteinsDNA-Binding ProteinsGenes, mycHumansLymphoma, Large B-Cell, DiffuseNuclear ProteinsPromoter Regions, GeneticProto-Oncogene Proteins c-bcl-6Trans-ActivatorsTranscription FactorsTranscription, GeneticTriazolesAzepinesBCL6 protein, humanBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsDNA-Binding Proteins(+)-JQ1 compoundNuclear ProteinsPOU2AF1 protein, humanProto-Oncogene Proteins c-bcl-6Trans-ActivatorsTranscription FactorsTriazoles

Identifiers

PMID24332044
PMCPMC4018722
OpenAlexW2002395443

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.