Evidence map›Paper›PMID 24331709›Full record

ArticleBiomaterials2014

Discovery of antibiotics-derived polymers for gene delivery using combinatorial synthesis and cheminformatics modeling.

Thrimoorthy Potta, Zhuo Zhen, Taraka Sai Pavan Grandhi, Matthew D Christensen, James Ramos, Curt M Breneman, Kaushal Rege

Open access · greenAbstract read
In one paragraph

Article in Biomaterials, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
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  6. Evaluation of drug carrier hepatotoxicity using primary cell culture models.Nanomedicine : nanotechnology, biology, and medicine · 2023
    Article
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  9. Review
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  11. An inhibitor screen identifies histone-modifying enzymes as mediators of polymer-mediated transgene expression from plasmid DNA.Journal of controlled release : official journal of the Controlled Release Society · 2018
    Article
  12. Article
  13. Article
  14. Kinome-level screening identifies inhibition of polo-like kinase-1 (PLK1) as a target for enhancing non-viral transgene expression.Journal of controlled release : official journal of the Controlled Release Society · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Thrimoorthy PottaChemical Engineering, Arizona State University, Tempe, AZ 85287-6106, USA.
Zhuo ZhenDepartment of Chemistry and Chemical Biology, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Taraka Sai Pavan GrandhiHarrington Biomedical Engineering, Arizona State University, Tempe, AZ 85287, USA.
Matthew D ChristensenChemical Engineering, Arizona State University, Tempe, AZ 85287-6106, USA.
James RamosHarrington Biomedical Engineering, Arizona State University, Tempe, AZ 85287, USA.
Curt M BrenemanDepartment of Chemistry and Chemical Biology, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Kaushal RegeChemical Engineering, Arizona State University, Tempe, AZ 85287-6106, USA; Harrington Biomedical Engineering, Arizona State University, Tempe, AZ 85287, USA. Electronic address: kaushal.rege@asu.edu.
Arizona State University · USRensselaer Polytechnic Institute · US

Funding

Engineering DNA Delivery Polymers using Combinatorial and Cheminformatics MethodsR01GM093229 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI REGE, KAUSHAL · 2011 to 2015
$1.5M
NIGMS NIH HHS 1R01GM093229-01A1NIGMS NIH HHS R01 GM093229
6 · The paper itself

Abstract

We describe the combinatorial synthesis and cheminformatics modeling of aminoglycoside antibiotics-derived polymers for transgene delivery and expression. Fifty-six polymers were synthesized by polymerizing aminoglycosides with diglycidyl ether cross-linkers. Parallel screening resulted in identification of several lead polymers that resulted in high transgene expression levels in cells. The role of polymer physicochemical properties in determining efficacy of transgene expression was investigated using Quantitative Structure-Activity Relationship (QSAR) cheminformatics models based on Support Vector Regression (SVR) and 'building block' polymer structures. The QSAR model exhibited high predictive ability, and investigation of descriptors in the model, using molecular visualization and correlation plots, indicated that physicochemical attributes related to both, aminoglycosides and diglycidyl ethers facilitated transgene expression. This work synergistically combines combinatorial synthesis and parallel screening with cheminformatics-based QSAR models for discovery and physicochemical elucidation of effective antibiotics-derived polymers for transgene delivery in medicine and biotechnology.

Indexed as

InformaticsModels, ChemicalAminoglycosidesAnti-Bacterial AgentsCombinatorial Chemistry TechniquesGene Transfer TechniquesPolymersQuantitative Structure-Activity RelationshipSupport Vector MachineAminoglycosidesAnti-Bacterial AgentsPolymersAminoglycosidesGene deliveryQuantitative structure–Activity relationship (QSAR) modelsRational design

Identifiers

PMID24331709
PMCPMC4238925
OpenAlexW1989997331

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.