Evidence map›Paper›PMID 24330683›Full record

ArticleBMC plant biology2013

DAYSLEEPER: a nuclear and vesicular-localized protein that is expressed in proliferating tissues.

Marijn Knip, Steven Hiemstra, Afke Sietsma, Marina Castelein, Sylvia de Pater, Paul Hooykaas

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

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  5. The History of Lentil (Frontiers in plant science · 2021
    Article
  6. A novel variant of Gh_D02G0276 is required for root-knot nematode resistance on chromosome 14 (D02) in Upland cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Marijn Knip
Steven Hiemstra
Afke Sietsma
Marina Castelein
Sylvia de Pater
Paul HooykaasDepartment of Molecular and Developmental Genetics, Institute of Biology, Leiden University, Sylviusweg 72, Leiden 2333 BE, The Netherlands. p.j.j.hooykaas@biology.leidenuniv.nl.
Leiden University · NLVrije Universiteit Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDAYSLEEPER is a domesticated transposase that is essential for development in Arabidopsis thaliana [Nature, 436:282-284, 2005]. It is derived from a hAT-superfamily transposon and contains many of the features found in the coding sequence of these elements [Nature, 436:282-284, 2005, Genetics, 158:949-957, 2001]. This work sheds light on the expression of this gene and localization of its product in protoplasts and in planta. Using deletion constructs, important domains in the protein were identified.

resultsDAYSLEEPER is predominantly expressed in meristems, developing flowers and siliques. The protein is mainly localized in the nucleus, but can also be seen in discrete foci in the cytoplasm. Using several vesicular markers, we found that these foci belong to vesicular structures of the trans-golgi network, multivesicular bodies (MVB's) and late endosomes. The central region as well as both the N- and the C-terminus are essential to DAYSLEEPER function, since versions of DAYSLEEPER deleted for these regions are not able to complement the daysleeper phenotype. Like hAT-transposases, we show that DAYSLEEPER has a functionally conserved dimerization domain [J Biol Chem, 282:7563-7575, 2007].

conclusionsDAYSLEEPER has retained the global structure of hAT transposases and it seems that most of these conserved features are essential to DAYSLEEPER's cellular function. Although structurally similar, DAYSLEEPER seems to have broadened its range of action beyond the nucleus in comparison to transposases.

Indexed as

Organ SpecificityArabidopsisArabidopsis ProteinsCell NucleusCell ProliferationEndosomesFlowersGene Expression ProfilingGene Expression Regulation, PlantGenetic Complementation TestGlucuronidaseGreen Fluorescent ProteinsMultivesicular BodiesOpen Reading FramesPhenotypePlant RootsArabidopsis ProteinsDAYSLEEPER protein, ArabidopsisGlucuronidaseGreen Fluorescent ProteinsTransposases

Identifiers

PMID24330683
PMCPMC4029315
OpenAlexW2083708474

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.