Evidence map›Paper›PMID 24330404›Full record

ArticleJournal of evolutionary biology2014

The effect of population bottlenecks on mutation rate evolution in asexual populations.

Y Raynes, A L Halstead, P D Sniegowski

Abstract read
In one paragraph

Article in Journal of evolutionary biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. SynonymousNAR genomics and bioinformatics · 2024
    Article
  2. Article
  3. Article
  4. Antitumor Drugs and Their Targets.Molecules (Basel, Switzerland) · 2020
    Review
  5. Migration promotes mutator alleles in subdivided populations.Evolution; international journal of organic evolution · 2019
    Article
  6. Review
  7. Article
  8. Sign of selection on mutation rate modifiers depends on population size.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  9. Review
  10. A Model for Designing Adaptive Laboratory Evolution Experiments.Applied and environmental microbiology · 2017
    Article
  11. Article
  12. Variability in fitness effects can preclude selection of the fittest.Annual review of ecology, evolution, and systematics · 2017
    Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Y RaynesCenter for Computational Molecular Biology, Brown University, Providence, RI, USA.
A L HalsteadDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.
P D SniegowskiDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.

Funding

Mutation rate catastrophe: testing a novel theory for the extinction of clonal orR01GM079483 · NIGMS · UNIVERSITY OF NEW MEXICO · PI GERRISH, PHILIP JOHN · 2008 to 2010
$1.1M
NIGMS NIH HHS GM079483-01A2NIGMS NIH HHS R01 GM079483
6 · The paper itself

Abstract

In the absence of recombination, a mutator allele can spread through a population by hitchhiking with beneficial mutations that appear in its genetic background. Theoretical studies over the past decade have shown that the survival and fixation probability of beneficial mutations can be severely reduced by population size bottlenecks. Here, we use computational modelling and evolution experiments with the yeast S. cerevisiae to examine whether population bottlenecks can affect mutator dynamics in adapting asexual populations. In simulation, we show that population bottlenecks can inhibit mutator hitchhiking with beneficial mutations and are most effective at lower beneficial mutation supply rates. We then subjected experimental populations of yeast propagated at the same effective population size to three different bottleneck regimes and observed that the speed of mutator hitchhiking was significantly slower at smaller bottlenecks, consistent with our theoretical expectations. Our results, thus, suggest that bottlenecks can be an important factor in mutation rate evolution and can in certain circumstances act to stabilize or, at least, delay the progressive elevation of mutation rates in asexual populations. Additionally, our findings provide the first experimental support for the theoretically postulated effect of population bottlenecks on beneficial mutations and demonstrate the usefulness of studying mutator frequency dynamics for understanding the underlying dynamics of fitness-affecting mutations.

Indexed as

Biological EvolutionModels, GeneticMutation RateComputer SimulationPopulation DynamicsYeastsasexual populationsbeneficial mutationshitchhikingmutation ratepopulation bottlenecksyeast

Identifiers

PMID24330404
PMCPMC4059786

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.