Evidence map›Paper›PMID 24328155›Full record

ArticleBiochemistry2014

YC-1 binding to the β subunit of soluble guanylyl cyclase overcomes allosteric inhibition by the α subunit.

Rahul Purohit, Bradley G Fritz, Juliana The, Aaron Issaian, Andrzej Weichsel, Cynthia L David, Eric Campbell, Andrew C Hausrath, Leida Rassouli-Taylor, Elsa D Garcin and 2 more

Abstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
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  5. The sGC-cGMP Signaling Pathway as a Potential Therapeutic Target in Doxorubicin-Induced Heart Failure: A Narrative Review.American journal of cardiovascular drugs : drugs, devices, and other interventions · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Redox regulation of soluble guanylyl cyclase.Nitric oxide : biology and chemistry · 2018
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Rahul PurohitDepartment of Chemistry and Biochemistry, The University of Arizona , Tucson, Arizona 85721, United States.
Bradley G Fritz
Juliana The
Aaron Issaian
Andrzej Weichsel
Cynthia L David
Eric Campbell
Andrew C Hausrath
Leida Rassouli-Taylor
Elsa D Garcin
Matthew J Gage
William R Montfort
University of Arizona · USNorthern Arizona University · USUniversity of Maryland, Baltimore County · US

Funding

VITAMIN AP30CA023074 · NCI · UNIVERSITY OF ARIZONA · PI Dan Theodorescu · 1985 to 2026
$110.2M
SOUTHWEST ENVIRONMENTAL HEALTH SCIENCES CENTERP30ES006694 · NIEHS · UNIVERSITY OF ARIZONA · PI DEAN BILLHEIMER · 1994 to 2026
$36.7M
Uranium as an Environmental Risk Factor for Cancer Among the NavajoU54CA143924 · NCI · UNIVERSITY OF ARIZONA · PI Jennifer Wright Bea · 2009 to 2026
$26.7M
CHEMISTRY-BIOLOGY INTERFACE TRAINING PROGRAMT32GM008804 · NIGMS · UNIVERSITY OF ARIZONA · PI MONTFORT, WILLIAM R. · 2003 to 2023
$3.9M
SALIVARY PROTEINS FROM BLOOD-SUCKING INSECTSR01HL062969 · NHLBI · UNIVERSITY OF ARIZONA · PI MONTFORT, WILLIAM R. · 2000 to 2012
$3.4M
Quantitative Biology: a Graduate Curriculum Linking the Physical and Biomedical ST32EB009419 · NIBIB · BRANDEIS UNIVERSITY · PI GELLES, JEFF, KONDEV, JANE · 2009 to 2018
$2.8M
NCI NIH HHS CA023074NCI NIH HHS P30 CA023074NCI NIH HHS U54 CA143924NHLBI NIH HHS HL062969NHLBI NIH HHS R01 HL062969NIBIB NIH HHS T32 EB009419NIEHS NIH HHS ES06694NIEHS NIH HHS P30 ES006694NIGMS NIH HHS T32 GM008804
6 · The paper itself

Abstract

Soluble guanylate cyclase (sGC) is a heterodimeric heme protein and the primary nitric oxide receptor. NO binding stimulates cyclase activity, leading to regulation of cardiovascular physiology and making sGC an attractive target for drug discovery. YC-1 and related compounds stimulate sGC both independently and synergistically with NO and CO binding; however, where the compounds bind and how they work remain unknown. Using linked equilibrium binding measurements, surface plasmon resonance, and domain truncations in Manduca sexta and bovine sGC, we demonstrate that YC-1 binds near or directly to the heme-containing domain of the β subunit. In the absence of CO, YC-1 binds with a Kd of 9-21 μM, depending on the construct. In the presence of CO, these values decrease to 0.6-1.1 μM. Pfizer compound 25 bound ∼10-fold weaker than YC-1 in the absence of CO, whereas compound BAY 41-2272 bound particularly tightly in the presence of CO (Kd = 30-90 nM). Additionally, we found that CO binds much more weakly to heterodimeric sGC proteins (Kd = 50-100 μM) than to the isolated heme domain (Kd = 0.2 μM for Manduca β H-NOX/PAS). YC-1 greatly enhanced binding of CO to heterodimeric sGC, as expected (Kd ∼ 1 μM). These data indicate the α subunit induces a heme pocket conformation with a lower affinity for CO and NO. YC-1 family compounds bind near the heme domain, overcoming the α subunit effect and inducing a heme pocket conformation with high affinity. We propose this high-affinity conformation is required for the full-length protein to achieve high catalytic activity.

Indexed as

Allosteric RegulationAnimalsCarbon MonoxideCattleGuanylate CyclaseHemeIndazolesManducaModels, MolecularNitric OxideProtein BindingProtein ConformationProtein Structure, TertiaryProtein SubunitsReceptors, Cytoplasmic and NuclearSoluble Guanylyl Cyclase3-(5'-hydroxymethyl-2'-furyl)-1-benzylindazoleCarbon MonoxideGuanylate CyclaseHemeIndazolesNitric OxideProtein SubunitsReceptors, Cytoplasmic and NuclearSoluble Guanylyl Cyclase

Identifiers

PMID24328155
PMCPMC3914721
OpenAlexW2057106948

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.