Evidence map›Paper›PMID 24325963›Full record

ArticleThe Journal of infectious diseases2014

Toll-like receptor polymorphism associations with HIV-1 outcomes among sub-Saharan Africans.

Romel D Mackelprang, Abigail W Bigham, Connie Celum, Guy de Bruyn, Kristin Beima-Sofie, Grace John-Stewart, Allan Ronald, Nelly R Mugo, Kati J Buckingham, Michael J Bamshad and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Effect of Toll-Like Receptor 7 Gene Polymorphism and ABO Blood Groups on the Severity of COVID-19 Patients.Acta informatica medica : AIM : journal of the Society for Medical Informatics of Bosnia & Herzegovina : casopis Drustva za medicinsku informatiku BiH · 2022
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  18. A preliminary assessment ofPapua and New Guinea medical journal
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 5 countries.

Romel D MackelprangDepartment of Global Health.
Abigail W Bigham
Connie Celum
Guy de Bruyn
Kristin Beima-Sofie
Grace John-Stewart
Allan Ronald
Nelly R Mugo
Kati J Buckingham
Michael J Bamshad
James I Mullins
M Juliana McElrath
Jairam R Lingappa
Cancer Research Center · USUniversity of Manitoba · CAUniversity of Michigan–Ann Arbor · USUniversity of Nairobi · KEUniversity of the Witwatersrand · ZAUniversity of Washington · US

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Kenneth Sherr · 1988 to 2026
$104.9M
INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
Viral Determinants of HIV-1 Transmission in African HeterosexualsP01AI057005 · NIAID · UNIVERSITY OF WASHINGTON · PI COREY, LAWRENCE · 2003 to 2014
$20.5M
VENEREAL DISEASET32AI007140 · NIAID · UNIVERSITY OF WASHINGTON · PI Julia Cook Dombrowski · 1985 to 2026
$19.4M
Urgent Versus Post-Stabilization ART in HIV+ Children with Severe Co-infectionsR01HD023412 · NICHD · UNIVERSITY OF WASHINGTON · PI Grace C. John-Stewart, DALTON CHEKOKO WAMALWA · 1987 to 2026
$12.2M
Pediatric HIV-1 in Africa: Pathogenesis and ManagementK24HD054314 · NICHD · UNIVERSITY OF WASHINGTON · PI JOHN-STEWART, GRACE C. · 2006 to 2016
$1.2M
Host Genetic Factors in the HIV Virus Life-Cycle and HIV Disease ProgressionR21AI073115 · NIAID · UNIVERSITY OF WASHINGTON · PI LINGAPPA, JAIRAM RAO · 2007 to 2008
$426k
NHGRI NIH HHS T32 HG000035NHGRI NIH HHS T32 HG00035NIAID NIH HHS AI073115NIAID NIH HHS AI27757NIAID NIH HHS P01 AI057005NIAID NIH HHS P30 AI027757NIAID NIH HHS R21 AI073115NIAID NIH HHS T32 AI007140NIAID NIH HHS T32AI007140NICHD NIH HHS K24 HD054314NICHD NIH HHS R01 HD023412
6 · The paper itself

Abstract

objectiveWe evaluated Toll-like receptors (TLRs) single nucleotide polymorphisms (SNPs) for associations with HIV-1 acquisition, set-point and disease progression in African couples.

methodsSeven candidate and 116 haplotype-tagging SNPs (tagSNPs) were genotyped in 504 HIV-1 infected cases, and 343 seronegative controls.

resultsTLR9 1635A/G was associated with reduced HIV-1 acquisition among HIV-seronegative controls with high but not low HIV-1 exposure (odds ratio [OR] = 0.7; P = .03 and OR = 0.9, P = .5, respectively). TLR7 rs179012 and TLR2 597C/T reduced set-point; the latter modified by time since HIV-1 acquisition. TLR8 1A/G reduced disease progression.

conclusionsTLR SNPs impact HIV-1 outcomes with epidemiologic factors modifying these relationships.

Indexed as

Africa South of the SaharaAnti-HIV AgentsEvolution, MolecularGenetic VariationHIV-1HIV InfectionsHumansMutationPhylogenyRNA, ViralToll-Like ReceptorsViral LoadVirus ReplicationAnti-HIV AgentsRNA, ViralToll-Like ReceptorsAcute InfectionGeneticsHeterosexual HIV-1 transmissionHIV-1 acquisitionHIV-1 set-pointProgressionRisk FactorsToll-like ReceptorsViral load

Identifiers

PMID24325963
PMCPMC3997584
OpenAlexW2153134282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.