ArticlePloS one2013
RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- An R2R3 MYB transcription factor GhMYB5: regulator of CHS expression and proanthocyanin synthesis in brown cotton (Gossypium hirsutum L.).BMC genomics · 2025Article
- The Drought Tolerance Function and Tanscriptional Regulation ofPlants (Basel, Switzerland) · 2024Article
- Assessing Drought Tolerance in a Large Number of Upland Cotton Plants (Life (Basel, Switzerland) · 2023Article
- Transcriptome analysis of multiple tissues reveals the potential mechanism of death under acute heat stress in chicken.BMC genomics · 2023Article
- Salt Stress-Related Mechanisms in Leaves of the Wild BarleyLife (Basel, Switzerland) · 2023Article
- Whole Transcriptome Sequencing Reveals Drought Resistance-Related Genes in Upland Cotton.Genes · 2022Article
- Article
- Transcriptome expression profiles reveal response mechanisms to drought and drought-stress mitigation mechanisms by exogenous glycine betaine in maize.Biotechnology letters · 2022Review
- Physiological Analysis and Transcriptome Sequencing Reveal the Effects of Salt Stress on Banana (Frontiers in plant science · 2022Article
- Progressive Genomic Approaches to Explore Drought- and Salt-Induced Oxidative Stress Responses in Plants under Changing Climate.Plants (Basel, Switzerland) · 2021Review
- Comparative Transcriptomic Analysis of Biological Process and Key Pathway in Three Cotton (International journal of molecular sciences · 2019Article
- Article
- WRKYs, the Jack-of-various-Trades, Modulate Dehydration Stress in Populus davidiana-A Transcriptomic Approach.International journal of molecular sciences · 2019Article
- Transcriptome response of roots to salt stress in a salinity-tolerant bread wheat cultivar.PloS one · 2019Article
- Comparative transcriptomic analysis reveals common molecular factors responsive to heat and drought stress in Agrostis stolonifera.Scientific reports · 2018Article
- Recent insights into cotton functional genomics: progress and future perspectives.Plant biotechnology journal · 2018Review
- Transcriptomic analysis of drought stress responses of sea buckthorn (Hippophae rhamnoidessubsp. sinensis) by RNA-Seq.PloS one · 2018Article
- Genome-Wide Expression Profiles of Hemp (International journal of genomics · 2018Article
- Genome-wide comparative transcriptome analysis of CMS-D2 and its maintainer and restorer lines in upland cotton.BMC genomics · 2017Article
- Exploring drought stress-regulated genes in senna (Cassia angustifolia Vahl.): a transcriptomic approach.Functional & integrative genomics · 2017Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
An RNA-Seq experiment was performed using field grown well-watered and naturally rain fed cotton plants to identify differentially expressed transcripts under water-deficit stress. Our work constitutes the first application of the newly published diploid D5 Gossypium raimondii sequence in the study of tetraploid AD1 upland cotton RNA-seq transcriptome analysis. A total of 1,530 transcripts were differentially expressed between well-watered and water-deficit stressed root tissues, in patterns that confirm the accuracy of this technique for future studies in cotton genomics. Additionally, putative sequence based genome localization of differentially expressed transcripts detected A2 genome specific gene expression under water-deficit stress. These data will facilitate efforts to understand the complex responses governing transcriptomic regulatory mechanisms and to identify candidate genes that may benefit applied plant breeding programs.
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