Evidence map›Paper›PMID 24324740›Full record

ArticlePloS one2013

Characterization of L1 ORF1p self-interaction and cellular localization using a mammalian two-hybrid system.

Mark Sokolowski, Dawn deHaro, Claiborne M Christian, Kristine J Kines, Victoria P Belancio

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mark SokolowskiDepartment of Structural and Cellular Biology, Tulane School of Medicine, Tulane Cancer Center, Tulane Center for Aging, New Orleans, Louisiana, United States of America.
Dawn deHaro
Claiborne M Christian
Kristine J Kines
Victoria P Belancio
Tulane University · US

Funding

Mentoring a Cancer Genetics ProgramP20GM103518 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI DEININGER, PRESCOTT L. · 2012 to 2013
$4.3M
L 1 element as an inrinsic factor of mammalian agingK01AG030074 · NIA · TULANE UNIVERSITY OF LOUISIANA · PI BELANCIO, VICTORIA PEREPELITSA · 2008 to 2012
$504k
NIA NIH HHS K01 AG030074NIA NIH HHS K01AG030074NIGMS NIH HHS 8 P20 GM103518NIGMS NIH HHS P20 GM103518
6 · The paper itself

Abstract

Long INterspersed Element-1 (LINE-1, L1) is an active retrotransposon that mobilizes using a ribonucleoprotein particle (RNP) intermediate composed of the full-length bicistronic L1 mRNA and the two proteins (ORF1p and ORF2p) encoded by that mRNA. ORF1p and ORF2p demonstrate cis-preference for their encoding mRNA. Previous studies of ORF1p, purified from bacterial and insect cells demonstrated that this protein forms trimers in vitro. While valuable for understanding ORF1p function, these in vitro approaches do not provide any information on ORF1p self-interaction in the context of mammalian cells. We used a mammalian two-hybrid (M2H) system in order to study L1 ORF1p self-interaction in human and mouse cells. We demonstrate that the M2H system successfully detects human and mouse ORF1p self-interactions in transiently transfected mammalian cells. We also generated mouse and human ORF1p-specific antibodies to characterize the expression of ORF1p fusion proteins used in the M2H system. Using these antibodies, we demonstrate that ORF1p interaction in trans leads to the formation of heterodimers that are expected to produce a positive signal in the M2H system. Although the role for L1 ORF1p cis-preference in L1 mobilization is established, the impact of ability of ORF1pto interact in trans on the L1 replication cycle is not known. Furthermore, western blot analysis of ORF1p generated by a full-length L1, wild type ORF1, or a codon-optimized ORF1 expression vector is detected in the nucleus. In contrast, the addition of a tag to the N-terminus of the mouse and human ORF1 proteins can significantly alter the subcellular localization in a tag-specific manner. These data support that nuclear localization of ORF1p may contribute to L1 (and potentially the SINE Alu) RNP nuclear access in the host cell.

Indexed as

Two-Hybrid System Techniques3T3 CellsAnimalsHeLa CellsHumansLong Interspersed Nucleotide ElementsMammalsMiceProtein BindingProtein MultimerizationProteinsProtein TransportRecombinant Fusion ProteinsRNA, MessengerSubcellular FractionsTranscription FactorsMed14 protein, mouseORF1 protein, humanProteinsRecombinant Fusion ProteinsRNA, MessengerTranscription Factors

Identifiers

PMID24324740
PMCPMC3852968
OpenAlexW1971436187

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.