Evidence map›Paper›PMID 24324006›Full record

ArticleMolecular and cellular biology2014

The Cryptococcus neoformans Rim101 transcription factor directly regulates genes required for adaptation to the host.

Teresa R O'Meara, Wenjie Xu, Kyla M Selvig, Matthew J O'Meara, Aaron P Mitchell, J Andrew Alspaugh

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Cryptococcal nutrient acquisition and pathogenesis: dining on the host.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  11. Is Cryptococcus neoformans a pleomorphic fungus?Current opinion in microbiology · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Measuring Stress Phenotypes in Cryptococcus neoformans.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  18. Review
  19. Article
  20. UsingVirulence · 2022
    Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Teresa R O'MearaDepartments of Medicine and Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, North Carolina, USA.
Wenjie Xu
Kyla M Selvig
Matthew J O'Meara
Aaron P Mitchell
J Andrew Alspaugh

Funding

Coordinated Regulation of Virulence Genes in C. neoformansR01AI074677 · NIAID · DUKE UNIVERSITY · PI ALSPAUGH, ANDREW, WORMLEY, FLOYD L. · 2011 to 2020
$4.0M
Ras Signaling in C. neoformans virulence and developmentR01AI050128 · NIAID · DUKE UNIVERSITY · PI ALSPAUGH, ANDREW · 2003 to 2012
$3.0M
Genetic Control of Entry into Meiosis in YeastR01AI070272 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MITCHELL, AARON P · 2006 to 2010
$1.9M
Coordinated Regulation of Virulence Genes in C. neoformansR56AI074677 · NIAID · DUKE UNIVERSITY · PI ALSPAUGH, ANDREW · 2009 to 2010
$608k
CANDIDA GENE EXPRESSION DURING OROPHARYNGEAL INFECTIONR21DE023311 · NIDCR · CARNEGIE-MELLON UNIVERSITY · PI MITCHELL, AARON P · 2013 to 2014
$411k
Ras signaling in C.neoformans virulence and developmentR21AI050128 · NIAID · DUKE UNIVERSITY · PI ALSPAUGH, J. ANDREW · 2002 to 2002
$305k
NIAID NIH HHS AI050128NIAID NIH HHS AI074677NIAID NIH HHS R01 AI050128NIAID NIH HHS R01 AI070272NIAID NIH HHS R01 AI074677NIAID NIH HHS R21 AI050128NIAID NIH HHS R56 AI074677NIDCR NIH HHS R21 DE023311
6 · The paper itself

Abstract

The Rim101 protein is a conserved pH-responsive transcription factor that mediates important interactions between several fungal pathogens and the infected host. In the human fungal pathogen Cryptococcus neoformans, the Rim101 protein retains conserved functions to allow the microorganism to respond to changes in pH and other host stresses. This coordinated cellular response enables this fungus to effectively evade the host immune response. Preliminary studies suggest that this conserved transcription factor is uniquely regulated in C. neoformans both by the canonical pH-sensing pathway and by the cyclic AMP (cAMP)/protein kinase A (PKA) pathway. Here we present comparative transcriptional data that demonstrate a strong concordance between the downstream effectors of PKA and Rim101. To define Rim101-dependent gene expression during a murine lung infection, we used nanoString profiling of lung tissue infected with a wild-type or rim101Δ mutant strain. In this setting, we demonstrated that Rim101 controls the expression of multiple cell wall-biosynthetic genes, likely explaining the enhanced immunogenicity of the rim101Δ mutant. Despite its divergent upstream regulation, the C. neoformans Rim101 protein recognizes a conserved DNA binding motif. Using these data, we identified direct targets of this transcription factor, including genes involved in cell wall regulation. Therefore, the Rim101 protein directly controls cell wall changes required for the adaptation of C. neoformans to its host environment. Moreover, we propose that integration of the cAMP/PKA and pH-sensing pathways allows C. neoformans to respond to a broad range of host-specific signals.

Indexed as

Adaptation, PhysiologicalAnimalsCell WallCryptococcus neoformansCyclic AMPCyclic AMP-Dependent Protein KinasesDNA-Binding ProteinsFungal ProteinsGene Expression Regulation, FungalHumansMiceTranscription FactorsCyclic AMPCyclic AMP-Dependent Protein KinasesDNA-Binding ProteinsFungal ProteinsTranscription Factors

Identifiers

PMID24324006
PMCPMC3911494

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.