Evidence map›Paper›PMID 24322272›Full record

ArticleAIDS (London, England)2014

A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.

Steven A Yukl, Elizabeth Sinclair, Ma Somsouk, Peter W Hunt, Lorrie Epling, Maudi Killian, Valerie Girling, Peilin Li, Diane V Havlir, Steven G Deeks and 2 more

Open access · greenAbstract read
In one paragraph

Article in AIDS (London, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
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  11. Development of a NovelJournal of virology · 2021
    Article
  12. Article
  13. Article
  14. Gut Innate Immunity and HIV Pathogenesis.Current HIV/AIDS reports · 2021
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Steven A YuklaSan Francisco Veterans Affairs Medical Center bUniversity of California, San Francisco (UCSF), California, USA.
Elizabeth Sinclair
Ma Somsouk
Peter W Hunt
Lorrie Epling
Maudi Killian
Valerie Girling
Peilin Li
Diane V Havlir
Steven G Deeks
Joseph K Wong
Hiroyu Hatano
University of California, San Francisco · USSan Francisco VA Medical Center · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PETER W HUNT · 1988 to 2026
$93.6M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SEKALY, RAFICK PIERRE · 2011 to 2015
$29.5M
Promotion of Angiogenesis in Lung Cancer by MIFR01CA094121 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ARENBERG, DOUGLAS · 2002 to 2010
$1.9M
Preventing the Establishment of Enfuvirtide-resistance in the Latent ReservoirK24AI069994 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2007 to 2016
$1.5M
HIV, Gut Mucosal Turnover and Inflammation, and the Risk of Colorectal NeoplasiaK23CA157929 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SOMSOUK, MA · 2011 to 2014
$687k
Role of Gut Associated Lymphoid Tissue in HIV PersistenceR56AI091573 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K · 2011 to 2011
$643k
Effects of Acitretin on the activation of latent HIVR21AI104445 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI LI, PEILIN · 2013 to 2014
$410k
Quantification of HIV Reservoirs in the Gut-Associated Lymphatic SystemIK2CX000520 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI YUKL, STEVEN A · 2011 to 2015
–
CSRD VA IK2 CX000520NCI NIH HHS K23 CA157929NCI NIH HHS R01 CA094121NIAID NIH HHS K24 AI069994NIAID NIH HHS P30 AI027763NIAID NIH HHS P30-AI027763NIAID NIH HHS R21 AI104445NIAID NIH HHS R56 AI091573NIAID NIH HHS R56AI091573NIAID NIH HHS U19 AI096109NIAID NIH HHS U19AI096109
6 · The paper itself

Abstract

We compared different techniques for measuring gut HIV reservoirs and assessed for HIV in non-CD4 T cells. HIV DNA levels were similar when measured from rectal biopsies and isolated rectal cells, while HIV RNA tended to be higher in rectal cells. HIV DNA levels in total rectal cells were greater than those predicted from levels in sorted CD4 T cells, suggesting a reservoir in non-CD4 T cells, and HIV DNA was detected in sorted myeloid cells (7/7 subjects).

Indexed as

Viral LoadBiopsyCD4-Positive T-LymphocytesDNA, ViralHIVHIV InfectionsHumansMyeloid CellsRectumDNA, Viral

Identifiers

PMID24322272
PMCPMC4130176
OpenAlexW2056849508

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.