Evidence map›Paper›PMID 24319994›Full record

ArticleBiochemistry2013

The interaction between eukaryotic initiation factor 1A and eIF5 retains eIF1 within scanning preinitiation complexes.

Rafael E Luna, Haribabu Arthanari, Hiroyuki Hiraishi, Barak Akabayov, Leiming Tang, Christian Cox, Michelle A Markus, Lunet E Luna, Yuka Ikeda, Ryosuke Watanabe and 5 more

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
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  15. KRASInternational journal of molecular sciences · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Protein Synthesis Initiation in Eukaryotic Cells.Cold Spring Harbor perspectives in biology · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Rafael E LunaDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School , Boston, Massachusetts 02115, United States.
Haribabu Arthanari
Hiroyuki Hiraishi
Barak Akabayov
Leiming Tang
Christian Cox
Michelle A Markus
Lunet E Luna
Yuka Ikeda
Ryosuke Watanabe
Edward Bedoya
Cathy Yu
Shums Alikhan
Gerhard Wagner
Katsura Asano
Harvard University · USKansas State University · US

Funding

T CELL SPECIFIC TRANSCRIPTION COMPLEXESP01GM047467 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1992 to 2017
$28.6M
STRUCTURAL BASIS OF TRANSLATION INITIATION BY EIF-4ER01CA068262 · NCI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1996 to 2015
$3.6M
Studies on start codon selection by eukaryotic ribosomesR01GM064781 · NIGMS · KANSAS STATE UNIVERSITY · PI ASANO, KATSURA · 2002 to 2010
$2.4M
Novel targets to regulate NF-kB & SREBP activity: an approach to combat diabetesK01DK085198 · NIDDK · HARVARD MEDICAL SCHOOL · PI ARTHANARI, HARIBABU · 2010 to 2012
$455k
NCI NIH HHS CA68262NCI NIH HHS R01 CA068262NIDDK NIH HHS K01 DK085198NIDDK NIH HHS K01-DK085198NIGMS NIH HHS GM47467NIGMS NIH HHS GM64781NIGMS NIH HHS P01 GM047467NIGMS NIH HHS R01 GM064781
6 · The paper itself

Abstract

Scanning of the mRNA transcript by the preinitiation complex (PIC) requires a panel of eukaryotic initiation factors, which includes eIF1 and eIF1A, the main transducers of stringent AUG selection. eIF1A plays an important role in start codon recognition; however, its molecular contacts with eIF5 are unknown. Using nuclear magnetic resonance, we unveil eIF1A's binding surface on the carboxyl-terminal domain of eIF5 (eIF5-CTD). We validated this interaction by observing that eIF1A does not bind to an eIF5-CTD mutant, altering the revealed eIF1A interaction site. We also found that the interaction between eIF1A and eIF5-CTD is conserved between humans and yeast. Using glutathione S-transferase pull-down assays of purified proteins, we showed that the N-terminal tail (NTT) of eIF1A mediates the interaction with eIF5-CTD and eIF1. Genetic evidence indicates that overexpressing eIF1 or eIF5 suppresses the slow growth phenotype of eIF1A-NTT mutants. These results suggest that the eIF1A-eIF5-CTD interaction during scanning PICs contributes to the maintenance of eIF1 within the open PIC.

Indexed as

Amino Acid SequenceEukaryotic Initiation Factor-1Eukaryotic Translation Initiation Factor 5AHumansModels, MolecularMolecular Sequence DataPeptide Initiation FactorsProtein BindingProtein BiosynthesisProtein MultimerizationProtein Structure, TertiaryRNA-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentEukaryotic Initiation Factor-1eukaryotic peptide initiation factor-1AEukaryotic Translation Initiation Factor 5APeptide Initiation FactorsRNA-Binding ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID24319994
PMCPMC3917153
OpenAlexW2011847293

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.